LOCUS CK334170 588 bp mRNA linear EST 12-MAY-2010 DEFINITION H3007F02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3007F02 5', mRNA sequence. ACCESSION CK334170 VERSION CK334170.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 588) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3007 row: F column: 02 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..588 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3007F02-5" /db_xref="taxon:10090" /clone="H3007F02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 176 a 116 c 147 g 149 t ORIGIN 1 taactcagca gtcatgggag tttcggtgtg atgtgttctg catgactcta ctgggagttg 61 tgagaggagg ttagtcaagc tcagaactcc aaacatgtgt cttcgctgga tactgtgaat 121 ttagctcaag caagctcaga acttcacaca tgacactctg accctaagca tggtcctcat 181 gtcactcaag actcaatggc caatcaaaac ctccacatgg agttgccagg cagaagagga 241 ggtgactatt ccaggtgaca tggataggtg agaggaaact gcagtttgaa ggatttagtc 301 acctatgatg acgtgcatgt gtacttcact caggaagagt gggctttgct gcatccttct 361 cagaagagtc tctacaaagg tgtgatgcta gagacctata ggaatctcac agctataggt 421 tacatttggg aagaacatac aattgaagac catttccaaa cttctagaag tcatggaagg 481 catgaaagaa gttgttctgc agagcaaccc cctgagttta ttcaatgtgg taaagccttt 541 gcatatgaga gtggtagaca aaggcatcaa ataaaacata ctggaggg //