LOCUS CK334156 589 bp mRNA linear EST 12-MAY-2010 DEFINITION H3007D02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3007D02 5', mRNA sequence. ACCESSION CK334156 VERSION CK334156.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 589) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3007 row: D column: 02 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..589 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3007D02-5" /db_xref="taxon:10090" /clone="H3007D02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 131 a 154 c 160 g 144 t ORIGIN 1 gttaccagtt ctggagacac cacatgtgcc ctgtgggaca tcgagactgg ccagcagaca 61 accacattta ctggacacac tggagatgtc atgagcctgt ctcttgctcc tgacaccaga 121 ctgtttgtct ctggtgcttg tgatgcttca gccaagctct gggatgtccg agaagggatg 181 tgccggcaga cctttacagg acacgagtct gacatcaatg ccgtatgttt ctttcccaat 241 ggcaatgcct ttgccactgg ctcagacgat gccacatgca ggctgtttga cctccgtgca 301 gaccaggagc tcatgaccta ctcccatgac aacattatct gtggtatcac atctgtttcc 361 ttctccaaga gtggccgcct cctccttgct gggtatgatg acttcaactg taatgtctgg 421 gatgcactca aagctgacag agcaggtgtc ttagctggac acgacaaccg agtcagctgc 481 ttgggggtga ctgatgatgg catggctgtg gcaacagggt cctgggacag cttcctcaag 541 atctggaact aaagccagga gcaggtggat ggatgccatg gcgactgga //