LOCUS BX538232 6537 bp mRNA linear HUM 16-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686M0448 (from clone DKFZp686M0448).
ACCESSION BX538232
VERSION BX538232.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6537)
AUTHORS Lauber J., Bahr A., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
JOURNAL Submitted (17-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by Qiagen (Hilden/Germany) within the cDNA sequencing
consortium of the German Genome Project.
This clone (DKFZp686M0448) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..6537
/db_xref="H-InvDB:HIT000055014"
/organism="Homo sapiens"
/map="1q22"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686M0448"
/tissue_type="human amygdala"
/db_xref="taxon:9606"
CDS <1..3776
/codon_start=3
/gene="DKFZp686M0448"
/product="hypothetical protein"
/note="double-stranded RNA binding protein p136,
N-terminus truncated, differentially spliced"
/db_xref="GOA:P55265"
/db_xref="H-InvDB:HIT000055014.17"
/db_xref="HGNC:HGNC:225"
/db_xref="InterPro:IPR000607"
/db_xref="InterPro:IPR002466"
/db_xref="InterPro:IPR014720"
/db_xref="InterPro:IPR036388"
/db_xref="InterPro:IPR036390"
/db_xref="InterPro:IPR042371"
/db_xref="PDB:1QBJ"
/db_xref="PDB:1QGP"
/db_xref="PDB:1XMK"
/db_xref="PDB:2ACJ"
/db_xref="PDB:2GXB"
/db_xref="PDB:2L54"
/db_xref="PDB:2MDR"
/db_xref="PDB:3F21"
/db_xref="PDB:3F22"
/db_xref="PDB:3F23"
/db_xref="PDB:3IRQ"
/db_xref="PDB:3IRR"
/db_xref="PDB:5ZU1"
/db_xref="PDB:5ZUO"
/db_xref="PDB:5ZUP"
/db_xref="UniProtKB/Swiss-Prot:P55265"
/protein_id="CAD98075.1"
/translation="RLKVEKATWWGRVGGGSRPHWQPPGVRPCPEEVQDPGYSLSGYY
THPFQGYEHRQLRYQQPGPGSSPSSFLLKQIEFLKGQLPEAPVIGKQTPSLPPSLPGL
RPRFPVLLASSTRGRQVDIRGVPRGVHLGSQGLQRGFQHPSPRGRSLPQRGVDCLSSH
FQELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK
EAGTPPLWKIAVSTQAWNQHSGVVRPDGHSQGAPNSDPSLEPEDRNSTSVSEDLLEPF
IAVSAQAWNQHSGVVRPDSHSQGSPNSDPGLEPEDSNSTSALEDPLEFLDMAEIKEKI
CDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRE
RMQIKRNTNSVPETAPAAIPETRRNAEFLTCNIPTSNASNNMVTTEKVENGQEPVIKL
ENRQEARPEPARLKPPVHYNGPSKAGYVDFENGQWATDDIPDDLNSIRAAPGEFRAIM
EMPSFYSHGLPRCSPYKKLTECQLKNPISGLLEYAQFASQTCEFNMIEQSGPPHEPRF
KFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESSHYSTEKES
EKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVA
VGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMM
PNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGR
WFPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTEVTPVTGASLRRTMLLLSRS
PEAQPKTLPLTGSTFHDQIAMLSHRCFNTLTNSFQPSLLGRKILAAIIMKKDSEDMGV
VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKDSIFE
PAKGGEKLQIKKTVSFHLYISTAPCGDGALFDKSCSDRAMESTESRHYPVFENPKQGK
LRTKVENGEGTIPVESSDIVPTWDGIRLGERLRTMSCSDKILRWNVLGLQGALLTHFL
QPIYLKSVTLGYLFSQGHLTRAICCRVTRDGSAFEDGLRHPFIVNHPKVGRVSIYDSK
RQSGKTKETSVNWCLADGYDLEILDGTRGTVDGPRNELSRVSKKNIFLLFKKLCSFRY
RRDLLRLSYGEAKKAARDYETAKNYFKKGLKDMGYGNWISKPQEEKNFYLCPV"
regulatory 6498..6503
/regulatory_class="polyA_signal_sequence"
polyA_site 6520
BASE COUNT 1724 a 1638 c 1601 g 1574 t
ORIGIN
1 cccgactgaa ggtagagaag gctacgtggt gggggagggt ggggggaggg tcgcggccgc
61 actggcagcc tccgggtgtc cggccgtgtc ccgaggaagt gcaagacccg gggtattccc
121 tcagcggata ctacacccat ccatttcaag gctatgagca cagacagctc agataccagc
181 agcctgggcc aggatcttcc cccagtagtt tcctgcttaa gcaaatagaa tttctcaagg
241 ggcagctccc agaagcaccg gtgattggaa agcagacacc gtcactgcca ccttccctcc
301 caggactccg gccaaggttt ccagtactac ttgcctccag taccagaggc aggcaagtgg
361 acatcagggg tgtccccagg ggcgtgcatc tcggaagtca ggggctccag agagggttcc
421 agcatccttc accacgtggc aggagtctgc cacagagagg tgttgattgc ctttcctcac
481 atttccagga actgagtatc taccaagatc aggaacaaag gatcttaaag ttcctggaag
541 agcttgggga agggaaggcc accacagcac atgatctgtc tgggaaactt gggactccga
601 agaaagaaat caatcgagtt ttatactccc tggcaaagaa gggcaagcta cagaaagagg
661 caggaacacc ccctttgtgg aaaatcgcgg tctccactca ggcttggaac cagcacagcg
721 gagtggtaag accagacggt catagccaag gagccccaaa ctcagacccg agtttggaac
781 cggaagacag aaactccaca tctgtctcag aagatcttct tgagcctttt attgcagtct
841 cagctcaggc ttggaaccag cacagcggag tggtaagacc agacagtcat agccaaggat
901 ccccaaactc agacccaggt ttggaacctg aagacagcaa ctccacatct gccttggaag
961 atcctcttga gtttttagac atggccgaga tcaaggagaa aatctgcgac tatctcttca
1021 atgtgtctga ctcctctgcc ctgaatttgg ctaaaaatat tggccttacc aaggcccgag
1081 atataaatgc tgtgctaatt gacatggaaa ggcaggggga tgtctataga caagggacaa
1141 cccctcccat atggcatttg acagacaaga agcgagagag gatgcaaatc aagagaaata
1201 cgaacagtgt tcctgaaacc gctccagctg caatccctga gaccagaaga aacgcagagt
1261 tcctcacctg taatataccc acatcaaatg cctcaaataa catggtaacc acagaaaaag
1321 tggagaatgg gcaggaacct gtcataaagt tagaaaacag gcaagaggcc agaccagaac
1381 cagcaagact gaaaccacct gttcattaca atggcccctc aaaagcaggg tatgttgact
1441 ttgaaaatgg ccagtgggcc acagatgaca tcccagatga cttgaatagt atccgcgcag
1501 caccaggtga gtttcgagcc atcatggaga tgccctcctt ctacagtcat ggcttgccac
1561 ggtgttcacc ctacaagaaa ctgacagagt gccagctgaa gaaccccatc agcgggctgt
1621 tagaatatgc ccagttcgct agtcaaacct gtgagttcaa catgatagag cagagtggac
1681 caccccatga acctcgattt aaattccagg ttgtcatcaa tggccgagag tttcccccag
1741 ctgaagctgg aagcaagaaa gtggccaagc aggatgcagc tatgaaagcc atgacaattc
1801 tgctagagga agccaaagcc aaggacagtg gaaaatcaga agaatcatcc cactattcca
1861 cagagaaaga atcagagaag actgcagagt cccagacccc caccccttca gccacatcct
1921 tcttttctgg gaagagcccc gtcaccacac tgcttgagtg tatgcacaaa ttggggaact
1981 cctgcgaatt ccgtctcctg tccaaagaag gccctgccca tgaacccaag ttccaatact
2041 gtgttgcagt gggagcccaa actttcccca gtgtgagtgc tcccagcaag aaagtggcaa
2101 agcagatggc cgcagaggaa gccatgaagg ccctgcatgg ggaggcgacc aactccatgg
2161 cttctgataa ccagcctgaa ggtatgatct cagagtcact tgataacttg gaatccatga
2221 tgcccaacaa ggtcaggaag attggcgagc tcgtgagata cctgaacacc aaccctgtgg
2281 gtggcctttt ggagtacgcc cgctcccatg gctttgctgc tgaattcaag ttggtcgacc
2341 agtccggacc tcctcacgag cccaagttcg tttaccaagc aaaagttggg ggtcgctggt
2401 tcccagccgt ctgcgcacac agcaagaagc aaggcaagca ggaagcagca gatgcggctc
2461 tccgtgtctt gattggggag aacgagaagg cagaacgcat gggtttcaca gaggtaaccc
2521 cagtgacagg ggccagtctc agaagaacta tgctcctcct ctcaaggtcc ccagaagcac
2581 agccaaagac actccctctc actggcagca ccttccatga ccagatagcc atgctgagcc
2641 accggtgctt caacactctg actaacagct tccagccctc cttgctcggc cgcaagattc
2701 tggccgccat cattatgaaa aaagactctg aggacatggg tgtcgtcgtc agcttgggaa
2761 cagggaatcg ctgtgtgaaa ggagattctc tcagcctaaa aggagaaact gtcaatgact
2821 gccatgcaga aataatctcc cggagaggct tcatcaggtt tctctacagt gagttaatga
2881 aatacaactc ccagactgcg aaggatagta tatttgaacc tgctaaggga ggagaaaagc
2941 tccaaataaa aaagactgtg tcattccatc tgtatatcag cactgctccg tgtggagatg
3001 gcgccctctt tgacaagtcc tgcagcgacc gtgctatgga aagcacagaa tcccgccact
3061 accctgtctt cgagaatccc aaacaaggaa agctccgcac caaggtggag aacggagaag
3121 gcacaatccc tgtggaatcc agtgacattg tgcctacgtg ggatggcatt cggctcgggg
3181 agagactccg taccatgtcc tgtagtgaca aaatcctacg ctggaacgtg ctgggcctgc
3241 aaggggcact gttgacccac ttcctgcagc ccatttatct caaatctgtc acattgggtt
3301 accttttcag ccaagggcat ctgacccgtg ctatttgctg tcgtgtgaca agagatggga
3361 gtgcatttga ggatggacta cgacatccct ttattgtcaa ccaccccaag gttggcagag
3421 tcagcatata tgattccaaa aggcaatccg ggaagactaa ggagacaagc gtcaactggt
3481 gtctggctga tggctatgac ctggagatcc tggacggtac cagaggcact gtggatgggc
3541 cacggaatga gttgtcccgg gtctccaaaa agaacatttt tcttctattt aagaagctct
3601 gctccttccg ttaccgcagg gatctactga gactctccta tggtgaggcc aagaaagctg
3661 cccgtgacta cgagacggcc aagaactact tcaaaaaagg cctgaaggat atgggctatg
3721 ggaactggat tagcaaaccc caggaggaaa agaactttta tctctgccca gtatagtatg
3781 ctccagtgac agatggatta gggtgtgtca tactagggtg tgagagaggt aggtcgtagc
3841 attcctcatc acatggtcag gagatttttt tttctccttt tttttctttt taagccataa
3901 ttggtgatac tgaaaacttt gggttcccat ttatcctgct ttctttggga ttgctaggca
3961 aggtctggcc aggcccccct tttttccccc aagtgaagag gcagaaacct aagaagttat
4021 cttttctttc tacccaaagc atacatagtc actgagcacc tgcggtccat ttcctcttaa
4081 aagttttgtt ttgatttgtt tccatttcct ttccctttgt gtttgctaca ctgacctctt
4141 gcggtcttga ttaggtttca gtcaactctg gatcatgtca gggactgata atttcatttg
4201 tggattacgc agacccctct acttcccctc tttcccttct gagattcttt ccttgtgatc
4261 tgaatgtctc cttttccccc tcagagggca aagaggtgaa cataaaggat ttggtgaaac
4321 atttgtaagg gtaggagttg aaaactgcag ttcccagtgc cacggaagtg tgattggagc
4381 ctgcagataa tgctcagcca tcctcccatc ctgcacttta gccagctgca gggcgggcaa
4441 ggcaaggaaa gctgcttccc tggaagtgta tcactttctc cggcagctgg gaagtctaga
4501 accagccaga ctgggttaag ggagctgctc aagcaatagc agaggtttca cccggcagga
4561 tgacacagac cacttcccag ggagcacggg catgccttgg aatattgtca agcttccagc
4621 tgcctcttct cttaaagcat tcctaggaat attttccccg ccaatgctgg gcgtacaccc
4681 tagccaacgg gacaaatcct agagggtata aaatcatctc tgctcagata atcatgactt
4741 agcaagaata agggcaaaaa atcctgttgg cttaacgtca ctgttccacc tggtgtaata
4801 tctctcatga cagtgacacc aagggaagtt gactaagtca catgtaaatt aggagtgttt
4861 taaagaatgc catagatgtt gattcttaac tgctacagat aacctgtaat tgagcagatt
4921 taaaattcag gcatactttt ccatttatcc aagtgctttc atttttccag atggcttcag
4981 aagtaggctc gtgggcaggg cgcagacctg atctttatag ggttgacata gaaagcagta
5041 gttgtgggtg aaagggcagg ttgtcttcaa actctgtgag gtagaatcct ttgtctatac
5101 ctccatgaac attgactcgt gtgttcagag cctttggcct ctctgtggag tctggctctc
5161 tggctcctgt gcattctttg aatagtcact cgtaaaaact gtcagtgctt gaaactgttt
5221 cctttactca tgttgagggg actttgttgg cttttagagt gttggtcatg actccaagag
5281 cagagcaggg aagagcccaa gcatagactt ggtgccgtgg tgaaggctgc agtccagttt
5341 tgtgatgctg cttttacgtg tccctcgata acagtcagct agacacactc aggaggacta
5401 ctgaggctct gcgaccttca ggagctgagc ctgcctctct cctttagatg acagaccttc
5461 atctgggaac gtgctgagcc agcaccctca gatgatttcc ctccaaactg ctgactaggt
5521 catcctctgt ctggtagaga cattcacatc tttgctttta ttctgtgctc tctgtacttt
5581 tgaccaaaaa ttgaccaaag taagaaaatg caagttctaa aaatagacta agggtgcctt
5641 tgcagaacac caaagcatcc caaggaactg gtagggaagt ggcgcctgtc tcctggagtg
5701 gaagaggcct gctccctggc tctgggtctg ctgggggcac agtaaatcag tcttggcacc
5761 cacatccagg gcagagaggt ctgtggttct cagcatcaga aggcagcgca gcccctctcc
5821 tcttcaggct acagggttgt cacctgctga gtcctcaggt tgtttggcct ctctggtcca
5881 tcttgggcat taggttctcc agcagagctc tggccagctg cctcttcttt aactgggaac
5941 acaggctctc acaagatcag aacccccact cacccccaag atcttatcta gcaagcctgt
6001 agtattcagt ttctgttgta ggaagagagc gaggcatccc tgaattccac gcatctgctg
6061 gaaacgagcc gtgtcagatc gcacatccct gcgcccccat gcccccatgc ccctctgagt
6121 cacacaggac agaggaggca gagcttctgc ccactgttat cttcactttc tttgtccagt
6181 cttttgtttt taataagcag tgaccctccc tactcttctt tttaatgatt tttgtagttg
6241 atttgtctga actgtggcta ctgtgcattc cttgaataat cacttgtaaa aattgtcagt
6301 gcttgaagct gtttccttta ctcacattga agggacttcg ttggtttttt ggagtcttgg
6361 ttgtgactcc aagagcagag tgaggaagac ccccaagcat agactcgggt actgtgatga
6421 tggctgcagt ccagttttat gattctgctt ttatgtgtcc cttgataaca gtgacttaac
6481 aatatacatt cctcataaat aaaaaaaaaa caagaatctg aaaaaaaaaa aaaaaaa
//