LOCUS BX538109 4210 bp mRNA linear HUM 16-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686L17145 (from clone DKFZp686L17145);
complete cds.
ACCESSION BX538109
VERSION BX538109.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4210)
AUTHORS Bloecker H., Boecher M., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
JOURNAL Submitted (17-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by GBF (National Research Centre for Biotechnology
Ltd., Braunschweig/Germany) within the cDNA sequencing
consortium of the German Genome Project.
This clone (DKFZp686L17145) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..4210
/db_xref="H-InvDB:HIT000054892"
/organism="Homo sapiens"
/map="9q22.31"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686L17145"
/tissue_type="human colon endothel primary cell culture"
/db_xref="taxon:9606"
CDS 267..3725
/codon_start=1
/gene="DKFZp686L17145"
/product="hypothetical protein"
/note="isoleucine-tRNA ligase, differentially spliced"
/db_xref="GOA:Q7Z355"
/db_xref="H-InvDB:HIT000054892.14"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002301"
/db_xref="InterPro:IPR009008"
/db_xref="InterPro:IPR009080"
/db_xref="InterPro:IPR013155"
/db_xref="InterPro:IPR014729"
/db_xref="InterPro:IPR033709"
/db_xref="UniProtKB/TrEMBL:Q7Z355"
/protein_id="CAD98022.1"
/translation="MGITEYNNQCRAIVMRYSAEWKSTVSRLGRWIDFDNDYKTLYPQ
FMESVWWVFKQLYDKGLVYRGVKVMPFSTACNTPLSNFESHQNYKDVQDPSVFVTFPL
EEDETVSLVAWTTTPWTLPSNLAVCVNPEMQYVKIKDVARGRLLILMEARLSALYKLE
SDYEILERFPGAYLKGKKYRPLFDYFLKCKENGAFTVLVDNYVKEEEGTGVVHQAPYF
GAEDYRVCMDFNIIRKDSLPVCPVDASGCFTTEVTDFAGQYVKDADKSIIRTLKEQGR
LLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVENMVDQLLRNNDLCYWVPELVREKR
FGNWLKDARDWTISRNRYWGTPIPLWVSDDFEEVVCIGSVAELEELSGAKISDLHRES
VDHLTIPSRCGKGSLHRISEVFDCWFESGSMPYAQVHYPFENKREFEDAFPADFIAEG
IDQTRGWFYTLLVLATALFGQPPFKNVIVNGLVLASDGQKMSKRKKNYPDPVSIIQKY
GADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAYRFLIQNVLRLQKEEEI
EFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVVPRLVKFVDILTNWY
VRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNLKVLIDPVS
VQDKDTLSIHYLMLPRVREELIDKKTESAVSQMQSVIELGRVIRDRKTIPIKYPLKEI
VVIHQDPEALKDIESLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMVLGKRLKGA
FKAVMTSIKQLSSEELEQFQKTGTIVVEGHELHDEDIRLMYTFDQATGGTAQFEAHSD
AQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGTYLNS
VIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQLKGSELEITLTRGSSLPGPACAY
VNLNICANGSEQGGVLLLENPKGDNRLDLLKLKGVVTSIFGVKNTELAVFHDEAEIQN
QTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQLLNAEPQECLMGTVGTLLLEN
PLGQNGLTHQGLLYEAAKVFGLRSRKLKLFLNETQTQEITEDIPVKTLNMKTVYVSVL
PTTADF"
regulatory 4171..4176
/regulatory_class="polyA_signal_sequence"
polyA_site 4185
BASE COUNT 1237 a 877 c 969 g 1127 t
ORIGIN
1 ggcgcccggt tgcagcgtgg acgccggatg agttgctttt aggcttgctg gcccgcgggg
61 ctgtccaggc acgcgaggcc cctcagcaac aaaatgcttc aacaagttcc agaaaacata
121 aattttcctg ctgaagaaga gaaaatcttg gagttttgga ctgaatttaa ttgttttcag
181 gaatgcttaa agcaatcaaa acataaacca aagaatatga aattgataag acactgggaa
241 tcagaggacc agaggatgtg gccaaaatgg ggattacaga gtataacaat cagtgccgag
301 caattgtgat gagatattct gctgagtgga agtctactgt tagcagactt ggccgatgga
361 ttgactttga caatgactat aaaactctgt atccacaatt catggaatca gtctggtggg
421 tcttcaaaca actctatgat aaaggccttg tttatagagg tgtgaaagtc atgcccttct
481 ctacggcatg taacactcca ctttccaact tcgagtcaca ccagaattat aaggatgttc
541 aagatccttc agtatttgta actttccctt tggaagaaga tgaaactgta tctttagttg
601 cttggacaac cactccctgg actctaccta gtaaccttgc tgtgtgtgtt aatccagaaa
661 tgcaatatgt gaaaattaaa gatgttgcca gaggacgatt actcatttta atggaagcca
721 gattgtcagc cctctataaa ttggagagtg actatgagat ccttgaaaga tttcctggtg
781 cctatcttaa aggcaagaag tacaggcccc tgtttgacta tttcctgaag tgtaaagaga
841 atggcgcttt cactgtgctt gttgacaact atgtgaagga agaagaaggc acaggggttg
901 tccaccaagc tccttacttc ggtgctgagg actatcgggt ctgcatggac tttaacatta
961 ttcggaaaga ctcactccct gtttgccctg tggatgcttc aggctgcttc acaacggagg
1021 tgacagattt cgcaggacag tatgtgaagg atgctgacaa aagtatcatc aggactttga
1081 aggaacaagg ccgacttctg gttgccacca ccttcactca cagctaccct ttttgctgga
1141 gatcagacac tcctctaatt tacaaagcag tgcccagctg gtttgtgcga gtggagaaca
1201 tggtggacca gctcctaagg aacaatgacc tgtgctactg ggtcccagag ttggtacgag
1261 aaaaacgatt tggaaattgg ctgaaagatg cacgtgactg gacaatttcc agaaacagat
1321 actggggcac ccccatccca ctgtgggtca gcgatgactt tgaggaggtg gtatgcattg
1381 ggtcagtggc ggaacttgaa gaactgtcag gagcaaagat ctcagatctc cacagagaga
1441 gtgttgacca cctgaccatt ccttcacgct gtgggaaggg atccttgcac cgcatctctg
1501 aagtgtttga ctgttggttt gagagtggca gcatgcccta tgctcaggtt cattacccgt
1561 ttgaaaacaa gagggagttt gaggatgctt ttcctgcaga tttcattgcc gagggcatcg
1621 accaaaccag aggatggttt tataccctgc tggtgctggc cacggccctc tttggacaac
1681 cgcctttcaa gaacgtaatt gtgaatgggc ttgtcctggc aagtgatggc caaaaaatga
1741 gcaaacggaa aaagaattat ccagatccag tttccatcat ccagaagtat ggtgctgatg
1801 ccctcagatt atatctgatt aactcccctg tggtgagagc agaaaacctc cgctttaaag
1861 aagagggtgt gcgggacgtc cttaaggatg tactgctccc atggtacaat gcctatcgct
1921 tcttaatcca gaacgttctg aggctccaga aggaggaaga aatagaattt ctctacaatg
1981 agaacacggt tagagaaagc cccaacatta cagaccggtg gatcctgtcc ttcatgcagt
2041 ctctcattgg cttctttgag actgaaatgg cagcttatag gctttatact gtggtgcctc
2101 gcctggtcaa gtttgtagat attctgacca attggtatgt tagaatgaac cgcagaagat
2161 taaagggtga aaatgggatg gaggattgtg tcatggccct agaaaccttg tttagtgttc
2221 tgctttctct ttgcagactt atggctccct acacaccttt tctcactgaa ttgatgtacc
2281 agaatctaaa ggtgctgatt gaccctgttt ctgttcagga caaggacaca ctcagcattc
2341 actacctcat gctgccccgt gttcgagaag aattgattga caagaaaaca gagagtgcag
2401 tatctcagat gcagtctgtg attgaacttg gaagagtgat cagagaccga aaaactattc
2461 ccataaagta tcctttgaaa gaaattgtgg ttatccatca agatccagaa gctcttaaag
2521 atatcgagtc tttggagaag tatatcattg aggaactcaa tgttcgaaaa gttacactgt
2581 ctacagataa aaacaagtat ggcattcggc taagggcaga accagatcac atggtcctgg
2641 ggaagcgtct gaagggagcc tttaaggcag tgatgacgtc catcaagcag ttgagcagtg
2701 aggagctgga gcagttccag aagactggga ccattgttgt ggaaggccat gaattgcacg
2761 atgaagacat ccgcctcatg tacacctttg atcaggccac aggtgggact gcgcaatttg
2821 aagcacactc agatgctcag gctttggtcc tcttagatgt cactcctgac cagtcaatgg
2881 tagatgaagg aatggctcgg gaagtcatca atcgcataca gaaacttcgc aaaaagtgca
2941 atctggttcc aactgatgaa atcacagtgt actataaagc aaagtctgaa ggaacatatc
3001 tgaatagtgt tattgaaagc cacacagagt tcatatttac caccataaag gctcccttga
3061 aaccatatcc agtttctcca tcggataaag tccttattca agaaaaaaca cagttgaagg
3121 gatctgaact ggaaattaca ctcaccagag gatcttccct tcctggtcct gcttgtgcat
3181 atgtcaatct taacatttgt gcaaatggca gtgaacaagg tggagtattg ctcctggaaa
3241 atccaaaagg tgacaatagg ttggaccttt taaagctgaa gggtgttgtc actagcattt
3301 ttggtgtgaa aaatacagag ctggctgtct tccatgatga agcagaaata caaaaccaaa
3361 ctgacttact gagtcttagt ggaaaaacac tttgtgtgac tgcaggatcg gctccctctc
3421 tgatcaacag ttctagtact cttctttgtc agtatatcaa cctacagctc ctgaatgcag
3481 agccacaaga gtgtttaatg gggacagtgg gcactctcct gcttgaaaac ccacttgggc
3541 agaatggact cacccaccaa ggtcttctgt atgaagcagc caaggtgttt ggccttcgga
3601 gcaggaagct aaagctgttt ctgaatgaga cccaaacgca ggaaattaca gaagacatcc
3661 ccgtgaagac tttgaatatg aagactgtgt atgtttctgt gttaccaaca acagcagact
3721 tctagcatgt acttatcaat gttgttcggt cagcccttcc ctaattacac ctatccccta
3781 cacatacatg cacatagaca cacacatgaa cacactgaag atatttcctt caggtgtgtg
3841 taaaatacgc tgcttggatt gaaattcaaa tgggattgat tagtcaagta acttgagtcc
3901 tcacagtaat cttcacactt aaccttagac acctatgcag tcatgttggg agcaggttac
3961 aatgttactt cagcccacag tttatttcta tacttgagtt cttaagtaca gaagatagaa
4021 gtgatttaaa tggcatagta tatatatcat tttctggcct tttaaaattt atttgagacc
4081 tcttgatgaa atggacatat tatatatttc tgccacctgg attttcctgg ataatttgat
4141 ggaatatttt aagtttcagt aaatcagaac aataaacaaa ctcagataca aaaaaaaaaa
4201 aaaaaaaaca
//