LOCUS BX538010 6240 bp mRNA linear HUM 21-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686L0246 (from clone DKFZp686L0246);
complete cds.
ACCESSION BX538010
VERSION BX538010.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6240)
AUTHORS Ansorge W., Krieger S., Regiert T., Rittmueller C., Schwager B.,
Mewes H.W., Weil B., Amid C., Osanger A., Fobo G., Han M.,
Wiemann S.
JOURNAL Submitted (17-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by EMBL (European Molecular Biology Laboratories,
Heidelberg/Germany) within the cDNA sequencing consortium of
the German Genome Project.
This clone (DKFZp686L0246) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..6240
/db_xref="H-InvDB:HIT000054794"
/organism="Homo sapiens"
/map="7q31.1"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686L0246"
/tissue_type="human amygdala"
/db_xref="taxon:9606"
CDS 432..3983
/codon_start=1
/gene="DKFZp686L0246"
/product="hypothetical protein"
/note="NrCAM protein, differentially spliced"
/db_xref="GOA:Q92823"
/db_xref="H-InvDB:HIT000054794.16"
/db_xref="HGNC:HGNC:7994"
/db_xref="InterPro:IPR003006"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR026966"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="PDB:1UEN"
/db_xref="PDB:1UEY"
/db_xref="UniProtKB/Swiss-Prot:Q92823"
/protein_id="CAD97960.1"
/translation="MQLKIMPKKKRLSAGRVPLILFLCQMISALEVPLDLVQPPTITQ
QSPKDYIIDPRENIVIQCEAKGKPPPSFSWTRNGTHFDIDKDPLVTMKPGTGTLIINI
MSEGKAETYEGVYQCTARNERGAAVSNNIVVRPSRSPLWTKEKLEPITLQSGQSLVLP
CRPPIGLPPPIIFWMDNSFQRLPQSERVSQGLNGDLYFSNVLPEDTREDYICYARFNH
TQTIQQKQPISVKVISVDELNDTIAANLSDTEFYGAKSSRERPPTFLTPEGNASNKEE
LRGNVLSLECIAEGLPTPIIYWAKEDGMLPKNRTVYKNFEKTLQIIHVSEADSGNYQC
IAKNALGAIHHTISVRVKAAPYWITAPQNLVLSPGEDGTLICRANGNPKPRISWLTNG
VPIEIAPDDPSRKIDGDTIIFSNVQERSSAVYQCNASNEYGYLLANAFVNVLAEPPRI
LTPANTLYQVIANRPALLDCAFFGSPLPTIEWFKGAKGSALHEDIYVLHENGTLEIPV
AQKDSTGTYTCVARNKLGMAKNEVHLEIKDPTWIVKQPEYAVVQRGSMVSFECKVKHD
HTLSLTVLWLKDNRELPSDERFTVDKDHLVVADVSDDDSGTYTCVANTTLDSVSASAV
LSVVDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQT
EVSGTQTTAQLKLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTAVEGL
GSEPDNLVITWKPLNGFESNGPGLQYKVSWRQKDGDDEWTSVVVANVSKYIVSGTPTF
VPYLIKVQALNDMGFAPEPAVVMGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLK
SIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPLSHYTLNVRV
VNGKGEGPASPDRVFNTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYTLK
YQPINSTHELGPLVDLKIPTNKTRWTLKNLNFSTRYKFYFYAQTSAGSGSQITEEAVT
TVDEAMASRQVDIATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHAD
PEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN
EDGSFIGQYSGKKEKEPAEGNESSEAPSPVNAMNSFV"
BASE COUNT 1954 a 1266 c 1319 g 1701 t
ORIGIN
1 gggagccagg ggggatagct tcgtcgagaa cggaggacac cggcggtcca gggtcctggg
61 cagtcgcgcc agagctgagc ggagggcgcg gcgcgaggac gaatctttgt gacattctct
121 ctcagcattc tttatcccct gtttgctgaa gacttcgacc aaagctggtc ttagctgttg
181 gcattctcct gagaaaagga tagcttcaga aatcagaaaa acatttggga ggtgtctagc
241 ccagtggacc ttctgaagag caatgctaag aagacgtttg gtttaaagaa ttaaaaggaa
301 gaacaactta agagcttctt caaagtttcc cgcatgaaaa ttacttaaac gttgcacaca
361 acgtttcaca aaatcttttg tgaaagaaga aaaggaaatt cagtgtgtga gtctcagcag
421 gagttaagct aatgcagctt aaaataatgc cgaaaaagaa gcgcttatct gcgggcagag
481 tgcccctgat tctcttcctg tgccagatga ttagtgcact ggaagtacct cttgatctgg
541 tacagcctcc aaccatcacc caacagtctc caaaagatta cattattgac cctcgggaga
601 atattgtaat ccagtgtgaa gccaaaggga aaccgccccc aagcttttcc tggacccgta
661 atgggactca ttttgacatc gataaagacc ctctggtcac catgaagcct ggcacaggaa
721 cgctcataat taacatcatg agcgaaggga aagctgagac ctatgaaggg gtctatcagt
781 gtacagcaag gaacgaacgc ggagctgcag tttctaataa cattgttgtc cgcccatcca
841 gatcaccatt gtggaccaaa gaaaaacttg aaccaatcac acttcaaagt ggtcagtctt
901 tagtacttcc ctgcagaccc ccaattggat taccaccacc tataatattt tggatggata
961 attcctttca aagacttcca caaagtgaga gagtttctca aggtttgaat ggggaccttt
1021 atttttccaa tgtcctccca gaggacaccc gcgaagacta tatctgttat gctagattta
1081 atcatactca aaccatacag cagaagcaac ctatttctgt gaaggtgatt tcagtggatg
1141 aattgaatga cactatagct gctaatttga gtgacactga gttttatggt gctaaatcaa
1201 gtagagagag gccaccaaca tttttaactc cagaaggcaa tgcaagtaac aaagaggaat
1261 taagaggaaa tgtgctttca ctggagtgca ttgcagaagg actgcctacc ccaattattt
1321 actgggcaaa ggaagatgga atgctaccca aaaacaggac agtttataag aactttgaga
1381 aaaccttgca gatcattcat gtttcagaag cagactctgg aaattaccaa tgtatagcaa
1441 aaaacgcatt aggagccatc caccatacca tttctgttag agttaaagcg gctccatact
1501 ggatcacagc ccctcaaaat cttgtgctgt ccccaggaga ggatgggacc ttgatctgca
1561 gagctaatgg caaccccaaa cccagaatta gctggttaac aaatggagtc ccaatagaaa
1621 ttgcccctga tgaccccagc agaaaaatag atggcgatac cattattttt tcaaatgttc
1681 aagaaagatc aagtgcagtc tatcagtgca atgcctctaa tgaatatgga tatttactgg
1741 caaacgcatt tgtaaatgtg ctggctgagc caccacgaat cctcacacct gcaaacacac
1801 tctaccaggt cattgcaaac aggcctgctt tactagactg tgccttcttt gggtctcctc
1861 tcccaaccat cgagtggttt aaaggagcta aaggaagtgc tcttcatgaa gatatttatg
1921 ttttacatga aaatggaact ttggaaattc ctgtggccca aaaggacagt acaggaactt
1981 atacgtgtgt tgcaaggaat aaattaggga tggcgaagaa tgaagttcac ttagaaatca
2041 aagatcctac atggatcgtt aaacagcccg aatatgcagt tgtgcaaaga gggagcatgg
2101 tgtcctttga atgcaaagtg aaacatgatc acaccttatc cctcactgtc ctgtggctga
2161 aggacaacag ggaactgccc agtgatgaaa ggttcactgt tgacaaggat catctagtgg
2221 tagctgatgt cagtgacgat gacagcggga cctacacgtg tgtggccaac accactctgg
2281 acagcgtctc cgccagcgct gtgcttagcg ttgttgatgt cccaaatcct ccctttgact
2341 tagaactgac agatcaactt gacaaaagtg ttcagctgtc atggacccca ggcgatgaca
2401 acaatagccc cattacaaaa ttcatcatcg aatatgaaga tgcaatgcac aagccagggc
2461 tgtggcacca ccaaactgaa gtttctggaa cacagaccac agcccagctg aagctgtctc
2521 cttacgtgaa ctactccttc cgcgtgatgg cagtgaacag cattgggaag agcttgccca
2581 gcgaggcgtc tgagcagtat ttgacgaaag cctcagaacc agataaaaac cccacagctg
2641 tggaaggact gggatcagag cctgataatt tggtgattac gtggaagccc ttgaatggtt
2701 tcgaatctaa tgggccaggc cttcagtaca aagttagctg gcgccagaaa gatggtgatg
2761 atgaatggac atctgtggtt gtggcaaatg tatccaaata tattgtctca ggcacgccaa
2821 cctttgttcc atacctgatc aaagttcagg ccctgaatga catggggttt gcccccgagc
2881 cagctgtagt catgggacat tctggagaag acctcccaat ggtggctcct gggaacgtgc
2941 gtgtgaatgt ggtgaacagt accttagccg aggtgcactg ggacccagta cctctgaaaa
3001 gcatccgagg acacctacaa ggctatcgga tttactattg gaagacccag agttcatcta
3061 aaagaaacag acgtcacatt gagaaaaaga tcctcacctt ccaaggcagc aagactcatg
3121 gcatgttgcc ggggctagag cccttaagcc actacacact gaatgtccga gtggtcaatg
3181 ggaaagggga gggcccagcc agccctgaca gagtctttaa tactccagaa ggagtcccca
3241 gtgctccctc gtctttgaag attgtgaatc caacactgga ctctctcact ttggaatggg
3301 atccaccgag ccacccgaat ggcattttga cagagtacac cttaaagtat cagccaatta
3361 acagcacaca tgaattaggc cctctggtag atttgaaaat tcctaccaac aagacacggt
3421 ggactttaaa aaatttaaat ttcagcactc gatataagtt ttatttctat gcacaaacat
3481 cagcaggatc aggaagtcaa attacagagg aagcagtaac aactgtggat gaagcgatgg
3541 caagccggca ggtggatatt gcaactcagg gctggttcat tggtctgatg tgtgctgttg
3601 ctctccttat cttaattttg ctgattgttt gcttcatcag aagaaacaag ggtggtaaat
3661 atccagttaa agaaaaggaa gatgcccatg ctgaccctga aatccagcct atgaaggaag
3721 atgatgggac atttggagaa tacagtgatg cagaagacca caagcctttg aaaaaaggaa
3781 gtcgaactcc ttcagacagg actgtgaaaa aagaagatag tgacgacagc ctagttgact
3841 atggagaagg ggttaatggc cagttcaatg aggatggctc ctttattgga caatacagtg
3901 gtaagaaaga gaaagagccg gctgaaggaa acgaaagctc agaggcacct tctcctgtca
3961 acgccatgaa ttcctttgtt taatttttag gctctttgcc aatattccat ttctctagaa
4021 tgtttatcct aagcacttgt ttgtcagccc tctcatacta tgaacatatg ggtagagagt
4081 atattttctg ctgtatgtta gtattatgag aatagttaca gcaaaaacat aactcagtca
4141 aatgatatgt taatatgaac tggaatgcaa agtgcatact ttttcattca aaatgggtat
4201 tcttgatttc ctcagaactg ataaaaaata atgcaacatc accaacagat cctgttattt
4261 cctctgcagg atacagttca atatgatgca tgaaaaatgc tccacattta aaggacatac
4321 ccgtgtatgt tatgaaaaca tggtttgata ctttgtttat actaccctca gctgaacccc
4381 tatatatgaa ttccgttttc attgtcaaga gtgttactgt agtattctct agaacttcaa
4441 tgtctttgtg gacattgttg tgaaattggt gactatgtat agctgtcgtt agtctttttg
4501 ggagactgtt aggaacagtt tgtacagtat atacttgcta aatgagttca ttatgacagt
4561 cacattgctg atgcttactg agaactatta cctactcttg gctcctgtta ctccgtaggc
4621 ttcttaatct tccaggcatt acagcagcac agtgttctac tttttacatc atttctatgt
4681 tcggttgttt ttaggcataa acaatgtgta ttgcagtgca tttcggcatt tgtgccatac
4741 tggaagaatc aaaaacaaat catccaaatt aaatttcaaa cattatttca gagaacacag
4801 ggcaagacac atacagtgcc ttcagatatt aagcattcca caacatcgtg cattctgtat
4861 cagctggtcc agtccattct gggtcctaga ttactgtcat tgtctaaaag taacttttaa
4921 aaagcagagt tcatgaaaac tgcaatgctg ggaaaagaag gaaacatgaa aataaaaata
4981 agacagttta ttagaaatag catttcctca taagcataaa aagaaaatct ttgttgccaa
5041 ctgaagcaca tgatgatttt gtggtccttt atggtttcta ttacatgcag taagaaagat
5101 gtcaacatgc tagaaaatta attttaaaac taagttattc caacactaaa agcatacaac
5161 agcatgccaa cagtaatata ttattctcca agactttacc tatgtaagtg ttcaaaactc
5221 tgcagcatta aacaacgtgt atgcaaattg ttatggatac atttcagaat ctaagaaatc
5281 aggcaagtgc ttaaaaggcc aacggtccaa gggattacat ctgcagttta aaaagtaaat
5341 atatattcta tcgtattcat aaacaatatc tatcaaatgg gttacctcca aatatgaaaa
5401 tctataacaa cctatggttg aaggaatgct cagtttcatt tgccaataaa ttggtttctc
5461 ataacttgca tcaagtttaa ttttaagtaa agctttttat atgtagatat tttgttgaat
5521 ttgtaaatac acttaaaatg tagatgctat atgcttatag gtgttacata caaataaaca
5581 tgcaatgttt atgttgtact gtataagagg taagctaatt aatgcagtga atgggattgg
5641 aaagcatcta cttaaatatc tattgggttc ccccctcccc ccaccttttt tgctgtgaaa
5701 ctgaaatagt gaacttttct acgtattgac agcagatttt tcgatgaaat cttcagagct
5761 ttgcctatgg ggcacagtag gcctagtaac ctggcatgtt tgatatatgt aggtaaagca
5821 taatttaaag taatcccagg taaagatggc cctaaatact ttcatgtctc tatattcatt
5881 tttcacagat ccacctgtct cttgaaaata taaaaagaca aaacaggttt gccttggcat
5941 cagagagcac aaagattaaa agttacttta aatttgccaa tattttggga gaacaataaa
6001 actacatttt ttcctcttcc atactggtag atgcgaaatt tatctgtgca tgaaagggtc
6061 acttctgtaa tagtgcaaca gatttggtat taaaaattaa atgtggtttt aaaagttcct
6121 ctctcttttg taatttatgt tcccaattga gtgtgaatgt ccaagtaatg gtgtatgtaa
6181 tggtacaggc aaatgtgact ggatttccct caaaaaagta actattaaac aagaaaaaaa
//