LOCUS BX537948 8022 bp mRNA linear HUM 16-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686I1586 (from clone DKFZp686I1586);
complete cds.
ACCESSION BX537948
VERSION BX537948.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 8022)
AUTHORS Poustka A., Albert R., Moosmayer P., Schupp I., Wellenreuther R.,
Mewes H.W., Weil B., Amid C., Osanger A., Fobo G., Han M.,
Wiemann S.
JOURNAL Submitted (17-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by DKFZ (German Cancer Research Center,
Heidelberg/Germany) within the cDNA sequencing consortium of
the German Genome Project.
This clone (DKFZp686I1586) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..8022
/db_xref="H-InvDB:HIT000054732"
/organism="Homo sapiens"
/chromosome="5q33.3"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686I1586"
/tissue_type="human retina"
/db_xref="taxon:9606"
CDS 488..1357
/codon_start=1
/gene="DKFZp686I1586"
/product="hypothetical protein"
/note="sarcoglycan, delta (35kD dystrophin-associated
glycoprotein), differentially spliced"
/db_xref="GOA:Q92629"
/db_xref="H-InvDB:HIT000054732.14"
/db_xref="HGNC:HGNC:10807"
/db_xref="InterPro:IPR006875"
/db_xref="InterPro:IPR027661"
/db_xref="InterPro:IPR039972"
/db_xref="UniProtKB/Swiss-Prot:Q92629"
/protein_id="CAD97916.1"
/translation="MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMIL
ILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALY
FKSARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGA
ERLRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEA
TCRTELRLESKDGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAG
AGSTCQINTSVCL"
polyA_site 8003
BASE COUNT 2446 a 1635 c 1678 g 2263 t
ORIGIN
1 gagcagaaga aagagaggac ttatctccag catctagcac tacagagcag aggctgtgtg
61 gagaatggct gaaaaatcag aattggttgt agaagcagtt ttctttctgg ttgtgagtat
121 gagcccggca gacaccatga gcgctgttgc aggggagtcg gcctgtgctt gacacatgtg
181 tttcccattg atagctggag acagcccagt agctgtgagt cggtctgaca aagccatatt
241 gaagtacgga gtacggtttc aaagcagtca gaaaaagaac gggaatgctg ttcaggaaat
301 tcttcaggca tgggcaggga cttggctgca gttctgcagt tggaaaatct gactggggca
361 gcttctgagc gcaggctggg cctgcacaca ctcagcgggc cgagtggcca cctccttcag
421 agctgctcag cacgccgtgg gatcgcgggc ggttttcatc ggccggtttg tgaaacggac
481 aagagagatg cctcaggagc agtacactca ccaccggagc accatgcctg gctctgtggg
541 gccacaggta tacaaggtgg ggatttacgg ctggcggaaa cgatgcctgt atttctttgt
601 cctgctcctc atgattttaa tactggtgaa cttggccatg accatctgga ttctcaaagt
661 catgaacttc acaattgatg gaatgggaaa cctgaggatc acagaaaaag gtctaaagct
721 agaaggagac tctgaattct tacaacctct ctacgccaaa gaaatccagt cccgaccagg
781 taatgccctg tacttcaagt ctgccagaaa tgttacagtg aacattctca atgaccagac
841 taaagtgcta actcagctta taacaggtcc aaaagccgta gaagcttatg gtaaaaaatt
901 tgaggtaaaa actgtttctg gaaaattgct cttctctgca gacaataatg aagtggtagt
961 aggagctgaa agattacgag ttttaggagc ggagggcaca gtgttcccta aatctataga
1021 aacacctaat gtcagggcag accccttcaa agaactaagg ttggagtccc caacccggtc
1081 tctagtgatg gaggccccaa aaggagtgga aatcaatgca gaagctggca atatggaagc
1141 cacctgcagg acagagctga gactggaatc caaagatgga gagattaagt tagatgctgc
1201 gaaaatcagg ctacctagac tgcctcatgg atcctacacg cctacaggaa cgaggcagaa
1261 ggtcttcgag atctgcgtct gcgccaatgg gagattattc ctgtctcagg caggagctgg
1321 gtccacttgt cagataaaca caagtgtctg cctctgaaag actatccata gtggacattg
1381 ttggcagcat aaaggccttt tttggctttg gacactggct gccagctatt tttactagaa
1441 cacagaaagc ctatcaaaga ccttgtgtgt atgtgtacgt gtgtgtgcgt gcttgagtgt
1501 gttcgcgtgt gtgggtggat ataaatatat ataaatatat ataaataaat atatatatcc
1561 tctgtataaa atgaggtttc agtacaaaag gaaccatggg tgaccctgcg atatccactg
1621 tcattttcca tcccatcccc accacctgag tgacagaaat ctaaacacac atccgtccca
1681 acattcccca gaccattcag aatcacacag cgtattaaac actgacagaa tcttcatcta
1741 gatattcgag tagcagcata tcttctcttt tagtgtcatt acgagggagt gatggcagga
1801 atctcagtcg cactcaagct ctgagacctt tgtatcaaaa ataggcattt gatttcctgt
1861 tttagcttta gtaaggctgg ctaacttccc cctcttcaag ctaggaactg gcaatgctgt
1921 agaagtcagc cgtaggaatt caaaatggct ggcctacctt ggctaccaga catattgggg
1981 tttttgtagt tgaatgaatg aggaggatga atttcagcaa attttgaact gctcacccaa
2041 cttctgctat cttgctccct ccaaactcac agattctcct acagtcaaat taggagctgt
2101 aaatcagcac aaaataagat aacagctgtt cctcagtgag ctggaagcta cttaatggcc
2161 tgatgggcaa tgaacaaacg gatgatatgt ctctgtttaa gggaaaaatg gcttaaaagc
2221 tgttctgttc tcacttctga ctttaaccaa aagatttcaa cccacaatga tcaggtcaat
2281 caaaatccct aagagcagaa ctcctacccc aaaagaagcc tggaagtcta attaagagta
2341 gcataaggaa cctaattatg tttaccatgt ttcttgggat tggtgggaaa tgtcaaaaca
2401 tgccctttat ttttaaaggc attcacaaac tctctgactt tgttcttctt atatattttt
2461 tcagtgccgg gatattcata ttcctaaagc cactattgtg ttttctctaa gaagcactac
2521 atgccaccag aattgtgcac tgaaagataa tacaaactga gtgtctttat gagaatcact
2581 gtgtcccctg aggcccagca gtacctgctt ccctgtatgt ggaagcagca cctcattccc
2641 gccatcagct acctctcatc accccacctt catcatcatg ctccagggtc accctggcca
2701 gctcttgtgc tgggacaggg gattacacca tctctgttca aagaggggga aatgtgccta
2761 tgccttaagt caatgcactc agcaaggaga agcacatctt atttatcttg ttacctatag
2821 tttactttgg gtgattggag gggaatgact tagttatgac tggacatctt aaaagctgat
2881 agacaagcca aatggctggc agatgatgtg gatttcaaag agcccagaat gaactcatca
2941 ctggcttaga cagtcctgga tgccatttgg aaagtagtgg ccctgcaagc ctaaatgaag
3001 tagtatttgt aggcctgggt ggcatttgga tttttctttt ccctcaacaa ggttttactt
3061 tttcttactt tacaagcaag ggaagttttg tgataggaga gaaataaaag atttgatatt
3121 ttttgagatg acactcaagc atcaggctga gatttgcaca catgggatgt aaaagcaagc
3181 tgtgtgttgc ttagtcactt acttagaagt agatggtggg ggacagcggc gtgggtccta
3241 gcctggccag tgatgctgct ggcgtccaga ccccagactc actccaagca ctcttgttca
3301 atatctcatg cagaagagtt gggctggtca ctcttagggg tgagaccccg tgattggttg
3361 gtttgtagca ctaaggtcta aaaaggaaaa ccataaaaga catcagatta cgctggatca
3421 gtataattaa tattccatag ggccatgttg ccagaatctg tatgtatcaa tacagggttt
3481 ttccaagcca ggaaacgccc tccttggcta ctaggagcac ctatcccata tcattcagat
3541 aaacaatgat agctacaaag tcatttgtgg ctagataggt taagacaggt gattttttaa
3601 agtagactgt ctttgcattt tgccatctga agttcattaa tctttagatg acaaaaaaag
3661 caaaaagttc ccagaacgtt tttgcttaga ttttgttcta atcaccacgt gaaggaatga
3721 gattagcacc acaagtttca tgccaataaa agagactggt gtgatcccac atgcaaaatt
3781 taatcctaag ggtagtgaga tcacaaacag aataaaaata agagcaatca accatataaa
3841 tcaagtacct attgggaaca gacataacat tcaatttttc atttatgcta agtgaccaca
3901 gtatacaaag taataagcag gaaatttgat atgggttaaa ttatgcattt tgttcagatt
3961 ttggaaattg gtatgcatta taagtttctc aatgtacatc tttttatccc aacaccctca
4021 aactagaata tttgtcagtg gtcaagagaa aaaattttac ctgaattctt gggggccggc
4081 ggggagcttt tacattaaaa atctactaac gcctactttt taaaaaatga gattctttct
4141 aatctttata tatgacattt tctagacaat cgcacctttg ggtatattaa acagctggta
4201 tcataacaaa gaatccaaat gaaccttcaa tatactagaa gttctagtag gttaatattg
4261 ttcagaagat ttttacaaat taaaaactga tttccaaata tgttcaacat ttacttctat
4321 ttgatatctg ctcaagaagt catagaagtc ttgggaaact attcgagtat cacagaggtt
4381 ttcaaaagcc cttatggtga catctaccta ggtaaaagcc tgacatgtgg ctttataatt
4441 gttatgttac ccaagggata aacttgaact ggctttgaac atcctttagg tcattttctc
4501 tttggataat tttcatcgca tatccggcaa ctatagacca aagtttgctt aaggtttgac
4561 cctagagcag aggtgggcaa actatgacct ggaaaccaaa tctgacttac caccttttcc
4621 tgtagttaaa gttttattgt cacatagcca catacattca tttacatgtt ttctgatttt
4681 acactacagc agcaggatgg agtagttgtg tcagagacta tgtatcccac aaagcataga
4741 ttacttacta tttagtcctt tacaggcaaa gtttcctcac ccctgaccta gaggtttttg
4801 tggtatgcat tggatatagc aggaaagaaa gcacatttcc aaacagcagg gagtaagctt
4861 acatttctgt gtaggtttgg gaatatagtt acttggcaaa gtctttcagg aaggaagccc
4921 ttccttatgt tacatgtgga aagcctgcct tccaagacat gtggaagtaa ttgatccacc
4981 tgccagagaa acacaggctc agaggatgcc tgggaacagg gaggatggga ttagtggaag
5041 cttaatggaa aaggaaagtt atgatcctcc aagaccctta attgatagac cataccaggt
5101 tctgcaggtc agcatcattg tgtaatgaga gtgaagtagg ggaccctgtg gttcaacctt
5161 agaatctgtt tcctgtaggc tctttctgct gtctatattc attaaagttt tccacttcac
5221 cctcccatag tctagaggga tgcccattcc atggtcctcc agagaatagt tttgacttaa
5281 catgtctgtt tagcccacat cacgtcagtt atcaacaccg ccactgtgct tactgttcct
5341 acagccacac caggcttgaa gagttagtga gaccaacaaa taattggaag tattggaaaa
5401 agcaaaatac atggggacaa aaaaaataca gtgaaattct ttttatcaaa ctgatgctgt
5461 gagaaaccag atgaatgcca gtttggcttt atttctaaga atctgggtct tcattctctg
5521 gtgtagaagg aatgcaaaaa actataacaa caacaacaaa aacatatttt gaaaagacat
5581 attctgacat ctctgcttgt gtgtggtaag gcaggttcct atcagacatt tatccctttg
5641 gtcaagatcc cttttgctca tccagggttt catactcaat atcgcttaaa aaaaaaaaag
5701 tatcagctag ggatgactct ggaagtatga gtatcatggt ggggaggaag gaattttttt
5761 taaatgtaaa tgacccccat ttaccagacc ctaatcaaag tcacttaagg gaatccctca
5821 gccttttatt tggaaacagt tgaaataaac tggcagcagc tagatcagag tatcttgctt
5881 tattttataa aggccaaagg tagtatgaag tttggaccaa aaaggtaaat agatccattc
5941 cagcacctga tactgatttt tcaaggctct atgaaaggtc aaaaatttca ttaaacaaga
6001 ccagttctcc ctcttccccc tgtcccaaga aatcttaggc atgaaaagga taaggaaaca
6061 gctcctggaa tgatacattt gcatagtgcc ctagtagcag gttgggaaag agttataata
6121 taagaaacaa ccttcgaaaa caggcctttt atctcaaaga taaaatgtct ttcttgtggt
6181 ctttcatcac tatctccgtg gtggaaggtt cccctagttc caacatattt ccattaaaat
6241 agtcaaagcc acggcattgg gatgtcagat gcctctcttt ctttgtggta atcggaattt
6301 aaaattatac agttgcctct gaatttctca tgcacaaagc caaaccactg ataagagata
6361 aagcagtctg aagcctgctg cttcagccag cacagcacac cacacacgct cgcactttca
6421 aaagcaatgt gatttctatg gttcttaaaa gctttcttca taagggagtc cctgaaattt
6481 ctcaaggcag gtttgaatgg caaagggaaa ataattactt gtgggaggtc ctccttttga
6541 gtattgttag agcatacatg taaaagaaaa taaccttttt ggggcaactc atgctcacac
6601 atgctgtttt ctttggttct ccccctacct tccttttgta gatattgaca gaataggagg
6661 aaatgagcat ccttatttga gaaagagcaa gaatgtcatg agcccttgat gcaatagtaa
6721 gtgtgatgtc atcatacagt gttaatgatg ctatcaaatc catcaataaa cagtctcaaa
6781 ccttccaaca acagtgctca ctgctgctcc tcaacttcag cccagcaagc agtaatatca
6841 tcacccattt tgagatatgc aggtggaata gaacaaagaa acagccactg taatcgagaa
6901 gcatgtttac tgtctaaatc cacctgttgc agtaggaagc cagagtgggg ttccaaatgc
6961 ctcattaagt atgtggacag cctcactagt aagtgagtga atttggcttc atcactgaac
7021 attagctaag gtcagcttaa taacacaaat atgaggccga cttctttgcg agaagagaaa
7081 agaaaacatc tgcttgattt aaaatccacc ccacatgcct agagttgtct aatagtccct
7141 cactttccaa tggcttcaca tcctacttct acatttgggg ttttttggtg aaatcagaga
7201 tagctcagga tttcataaaa cgagaaactc caaactggtc tattaggttc catgggaaca
7261 cttgtagcca aaggattgtc tgagggcagg aagacgacac ttgtcaacaa ggaagacagt
7321 gtttctttag ttcccatatt catctaattc atggggttct aacattttgg ggggccatag
7381 attcttttga caatctgagc caatctatga aacttctccc caaaaaagaa ccaccccaca
7441 aaatcttgca aaacgtaaga gattttcctg gatctgaagc tacccgaaga catgggaaga
7501 gttgtattct attattcaat tttaagaata tttattaata ttcactgagc tattgctagc
7561 cactgtgcta aacattttac atacattctc ctatttcatc ctcaaaacaa tcctttgagt
7621 tgggttttaa tatagttcca atattcggat gtgaaaactg aggcttatag tggctaagaa
7681 acttgcccaa agccactacc tagaaaatgg cagagctgga atgtaggttt aactcctgac
7741 cactatgcta taaagtcacc acatgtcaaa ctaattttca agttgttggg acatgtcccc
7801 tactaggttt taaactagat cttccttggt agatgaagct atagaacttc tattttccct
7861 gctttctgta gtctctcaca gtgacagcat ctatactaaa gtatagatac ctaaggggaa
7921 aatatagaaa gcctgcctga ataatagaat ctagaacaac aacaaaaata ttaatttttt
7981 ctgtgtatgc ttaggtcaag cttaaaaaaa aaaaaaaaaa aa
//