LOCUS BX537918 4701 bp mRNA linear HUM 16-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686I10142 (from clone DKFZp686I10142).
ACCESSION BX537918
VERSION BX537918.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4701)
AUTHORS Koehrer K., Beyer A., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
JOURNAL Submitted (17-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by BMFZ (Biomedical Research Center at the
Heinrich-Heine-University, Duesseldorf/Germany) within the cDNA
sequencing consortium of the German Genome Project.
This clone (DKFZp686I10142) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..4701
/db_xref="H-InvDB:HIT000054702"
/organism="Homo sapiens"
/map="9q31.2-32"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686I10142"
/tissue_type="human colon endothel primary cell culture"
/db_xref="taxon:9606"
CDS <1..4326
/codon_start=1
/gene="DKFZp686I10142"
/product="hypothetical protein"
/note="similar to polydom protein (Mus musculus),
N-terminus truncated"
/db_xref="GOA:Q4LDE5"
/db_xref="H-InvDB:HIT000054702.15"
/db_xref="HGNC:HGNC:15985"
/db_xref="InterPro:IPR000152"
/db_xref="InterPro:IPR000436"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR001759"
/db_xref="InterPro:IPR001881"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR003410"
/db_xref="InterPro:IPR009030"
/db_xref="InterPro:IPR011641"
/db_xref="InterPro:IPR013032"
/db_xref="InterPro:IPR013320"
/db_xref="InterPro:IPR018097"
/db_xref="InterPro:IPR035976"
/db_xref="InterPro:IPR036465"
/db_xref="UniProtKB/Swiss-Prot:Q4LDE5"
/protein_id="CAD97901.1"
/translation="QWNPSPMSIQCIPVRCGEPPSIMNGYASGSNYSFGAMVAYSCNK
GFYIEGEKKSTCEATGQWSSPIPTCHPVSCGEPPKVENGFLEHTTGRIFESEVRYQCN
PGYKSVGSPVFVCQANRHWHSESPLMCVPLDCGKPPPIQNGFMKGENFEVGSKVQFFC
NEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPEPPLLENQLVLKELTTEVGVVTFS
CKEGHVLQGPSVLKCLPSQQWNDSFPVCKIVLCTPPPLISFGVPIPSSALHFGSTVKY
SCVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGIIDVQGLAYLSTALY
TCKPGFELVGNTTTLCGENGHWLGGKPTCKAIECLKPKEILNGKFSYTDLHYGQIVTY
SCNRGFRLEGPSALTCLETGDWDVDAPSCNAIHCDSPQPIENGFVEGADYSYGAIIIY
SCFPGFQVAGHAMQTCEESGWSSSIPTCMPIDCGLPPHIDFGDCTKLKDDQGYFEQED
DMMEVPYVTPHPPYHLGAVAKTWENTKESPATHSSNFLYGTMVSYTCNPGYELLGNPV
LICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDL
RLCLENRKWSGASPRCEAISCKKPNPVMNGSIKGSNYTYLSTLYYECDPGYVLNGTER
RTCQDDKNWDEDEPICIPVDCSSPPVSANGQVRGDEYTFQKEIEHTCNEGFLLEGARS
RVCLANGSWSGATPDCVPVRCATPPQLANGVTEGLDYGFMKEVTFHCHEGYILHGAPK
LTCQSDGNWDAEIPLCKPVNCGPPEDLAHGFPNGFSFIHGGHIQYQCFPGYKLHGNSS
RRCLSNGSWSGSSPSCLPCRCSTPVIEYGTVNGTDFDCGKAARIQCFKGFKLLGLSEI
TCEADGQWSSGFPHCEHTSCGSLPMIPNAFISETSSWKENVITYSCRSGYVIQGSSDL
ICTEKGVWSQPYPVCEPLSCGSPPSVANAVATGEAHTYESEVKLRCLEGYTMDTDTDT
ITCQKDGRWFPERISCSPKKCPLPENITHILVHGDDFSVNRQVSVSCAEGYTFEGVNI
SVCQLDGTWEPPFSDESCSPVSCGKPESPEHGFVVGSKYTFESTIIYQCEPGYELEGN
RERVCQENRQWSGGVAICKETRCETPLEFLNGKADIENRTTGPNVVYSCNRGYSLEGP
SEAHCTENGTWSHPVPLCKPNPCPVPFVIPENALLSEKEFYVDQNVSIKCREGFLLQG
HGIITCNPDETWTQTSAKCEKISCGPPAHVENAIARGVHYQYGDMITYSCYSGYMLEG
FLRSVCLENGTWTSPPICRAVCRFPCQNGGICQRPNACSCPEGWMGRLCEEPICILPC
LNGGRCVAPYQCDCPPGWTGSRCHTAVCQSPCLNGGKCVRPNRCHCLSSWTGHNCSRK
RRTGF"
regulatory 4663..4668
/regulatory_class="polyA_signal_sequence"
polyA_site 4680
BASE COUNT 1241 a 1078 c 1137 g 1245 t
ORIGIN
1 cagtggaacc cttcccccat gtccatccag tgcatccctg tgcggtgtgg agagccacca
61 agcatcatga atggctatgc aagtggatca aactacagtt ttggagccat ggtggcttac
121 agctgcaaca aggggttcta catcgaaggg gaaaagaaga gcacctgcga agccacaggg
181 cagtggagta gtcctatacc gacgtgccac ccggtatctt gtggtgaacc acctaaagtt
241 gagaatggct ttctggagca tacaactggc aggatctttg agagtgaagt gaggtatcag
301 tgtaacccgg gctataagtc agtcggaagt cctgtatttg tctgccaagc caatcgccac
361 tggcacagtg aatcccctct gatgtgtgtt cctctcgact gtggaaaacc tcccccgatc
421 cagaatggct tcatgaaagg agaaaacttt gaagtagggt ccaaggttca gtttttctgt
481 aatgagggtt atgagcttgt tggtgacagt tcttggacat gtcagaaatc tggcaaatgg
541 aataagaagt caaatccaaa gtgcatgcct gccaagtgcc cagagccgcc cctcttggaa
601 aaccagctag tattaaagga gttgaccacc gaggtaggag ttgtgacatt ttcctgtaaa
661 gaagggcatg tcctgcaagg cccctctgtc ctgaaatgct tgccatccca gcaatggaat
721 gactctttcc ctgtttgtaa gattgttctt tgtaccccac ctcccctaat ttcctttggt
781 gtccccattc cttcttctgc tcttcatttt ggaagtactg tcaagtattc ttgtgtaggt
841 gggtttttcc taagaggaaa ttctaccacc ctctgccaac ctgatggcac ctggagctct
901 ccactgccag aatgtgttcc agtagaatgt ccccaacctg aggaaatccc caatggaatc
961 attgatgtgc aaggccttgc ctatctcagc acagctctct atacctgcaa gccaggcttt
1021 gaattggtgg gaaatactac caccctttgt ggagaaaatg gtcactggct tggaggaaaa
1081 ccaacatgta aagccattga gtgcctgaaa cccaaggaga ttttgaatgg caaattctct
1141 tacacggacc tacactatgg acagatcgtt acctactctt gcaaccgagg ctttcggctc
1201 gaaggtccca gtgccttgac ctgtttagag acaggtgatt gggatgtaga tgccccatct
1261 tgcaatgcca tccactgtga ttccccacaa cccattgaaa atggttttgt agaaggtgca
1321 gattacagct atggtgccat aatcatctac agttgcttcc ctgggtttca ggtggctggt
1381 catgccatgc agacctgtga agagtcagga tggtcaagtt ccatcccaac atgtatgcca
1441 atagactgtg gcctccctcc tcatatagat tttggagact gtactaaact caaagatgac
1501 cagggatatt ttgagcaaga agacgacatg atggaagttc catatgtgac tcctcaccct
1561 ccttatcatt tgggagcagt ggctaaaacc tgggaaaata caaaggagtc tcctgctaca
1621 cattcatcaa actttctgta tggtaccatg gtttcataca cctgtaatcc aggatatgaa
1681 cttctgggga accctgtgct gatctgccag gaagatggaa cttggaatgg cagtgcacca
1741 tcctgcattt caattgaatg tgacttgcct actgctcctg aaaatggctt tttgcgtttt
1801 acagagacta gcatgggaag tgctgtgcag tatagctgta aacctggaca cattctagca
1861 ggctctgact taaggctttg tctagagaat agaaagtgga gtggtgcctc cccacgctgt
1921 gaagccattt catgcaaaaa gccaaatcca gtcatgaatg gatccatcaa aggaagcaac
1981 tacacatacc tgagcacgtt gtactatgag tgtgaccccg gatatgtgct gaatggcact
2041 gagaggagaa catgccagga tgacaaaaac tgggatgagg atgagcccat ttgcattcct
2101 gtggactgca gttcaccccc agtctcagcc aatggccagg tgagaggaga cgagtacaca
2161 ttccaaaaag agattgaaca cacttgcaat gaagggttct tgcttgaggg agccaggagt
2221 cgggtttgtc ttgccaatgg aagttggagt ggagccactc ccgactgtgt gcctgtcaga
2281 tgtgccaccc cgccacaact ggccaatggg gtgacggaag gcctggacta tggcttcatg
2341 aaggaagtaa cattccactg tcatgagggc tacatcttgc acggtgctcc aaaactcacc
2401 tgtcagtcag atggcaactg ggatgcagag attcctctct gtaaaccagt caactgtgga
2461 cctcctgaag atcttgccca tggtttccct aatggttttt cctttattca tgggggccat
2521 atacagtatc agtgctttcc tggttataag ctccatggaa attcatcaag aaggtgcctc
2581 tccaatggct cctggagtgg cagctcacct tcctgcctgc cttgcagatg ttccacacca
2641 gtaattgaat atggaactgt caatgggaca gattttgact gtggaaaggc agcccggatt
2701 cagtgcttca aaggcttcaa gctcctagga ctttctgaaa tcacctgtga agccgatggc
2761 cagtggagct ctgggttccc ccactgtgaa cacacttctt gtggttctct tccaatgata
2821 ccaaatgcgt tcatcagtga gaccagctct tggaaggaaa atgtgataac ttacagctgc
2881 aggtctggat atgtcataca aggcagttca gatctgattt gtacagagaa aggggtatgg
2941 agccagcctt atccagtctg tgagcccttg tcctgtgggt ccccaccgtc tgtcgccaat
3001 gcagtggcaa ctggagaggc acacacctat gaaagtgaag tgaaactcag atgtctggaa
3061 ggttatacga tggatacaga tacagataca atcacctgtc agaaagatgg tcgctggttc
3121 cctgagagaa tctcctgcag tcctaaaaaa tgtcctctcc cggaaaacat aacacatata
3181 cttgtacatg gggacgattt cagtgtgaat aggcaagttt ctgtgtcatg tgcagaaggg
3241 tatacctttg agggagttaa catatcagta tgtcagcttg atggaacctg ggagccacca
3301 ttctccgatg aatcttgcag tccagtgtct tgtgggaaac ctgaaagtcc agaacatgga
3361 tttgtggttg gcagtaaata cacctttgaa agcacaatta tttatcagtg tgagcctggc
3421 tatgaactag aggggaacag ggaacgtgtc tgccaggaga acagacagtg gagtggaggg
3481 gtggcaatat gcaaagagac caggtgtgaa actccacttg aatttctcaa tgggaaagct
3541 gacattgaaa acaggacgac tggacccaac gtggtatatt cctgcaacag aggctacagt
3601 cttgaagggc catctgaggc acactgcaca gaaaatggaa cctggagcca cccagtccct
3661 ctctgcaaac caaatccatg ccctgttcct tttgtgattc ccgagaatgc tctgctgtct
3721 gaaaaggagt tttatgttga tcagaatgtg tccatcaaat gtagggaagg ttttctgctg
3781 cagggccacg gcatcattac ctgcaacccc gacgagacgt ggacacagac aagcgccaaa
3841 tgtgaaaaaa tctcatgtgg tccaccagct cacgtagaaa atgcaattgc tcgaggcgta
3901 cattatcaat atggagacat gatcacctac tcatgttaca gtggatacat gttggagggt
3961 ttcctgagga gtgtttgttt agaaaatgga acatggacat cacctcctat ttgcagagct
4021 gtctgtcgat ttccatgtca gaatgggggc atctgccaac gcccaaatgc ttgttcctgt
4081 ccagagggct ggatggggcg cctctgtgaa gaaccaatct gcattcttcc ctgtctgaac
4141 ggaggtcgct gtgtggcccc ttaccagtgt gactgcccgc ctggctggac ggggtctcgc
4201 tgtcatacag ctgtttgcca gtctccctgc ttaaatggtg gaaaatgtgt aagaccaaac
4261 cgatgtcact gtctttcttc ttggacggga cataactgtt ccaggaaaag gaggactggg
4321 ttttaaccac tgcacgacca tctggctctc ccaaaagcag gatcatctct cctcggtagt
4381 gcctgggcat cctggaactt atgcaaagaa agtccaacat ggtgctgggt cttgtttagt
4441 aaacttgtta cttggggtta ctttttttat tttgtgatat attttgttat tccttgtgac
4501 atactttctt acatgtttcc atttttaaat atgcctgtat tttctatata aaaattatat
4561 taaatagatg ctgctctacc ctcacaaaat gtacatattc tgctgtctat tgggaaagtt
4621 cctggtacac atttttattc agttacttaa aatgattttt ccattaaagt atattttgct
4681 actaaaaaaa aaaaaaaaaa a
//