LOCUS BX537436 5960 bp mRNA linear HUM 16-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686A1395 (from clone DKFZp686A1395).
ACCESSION BX537436
VERSION BX537436.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5960)
AUTHORS Bloecker H., Boecher M., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
JOURNAL Submitted (16-JUN-2003) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by GBF (National Research Centre for Biotechnology
Ltd., Braunschweig/Germany) within the cDNA sequencing
consortium of the German Genome Project.
This clone (DKFZp686A1395) is available at the RZPD in Berlin.
Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6,
14059 Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de
Further information about the clone and the sequencing project
is available at http://mips.gsf.de/proj/cDNA/
FEATURES Location/Qualifiers
source 1..5960
/db_xref="H-InvDB:HIT000054251"
/organism="Homo sapiens"
/map="12p13.3"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686A1395"
/tissue_type="human retina"
/db_xref="taxon:9606"
CDS 195..3119
/codon_start=1
/gene="DKFZp686A1395"
/product="hypothetical protein"
/note="voltage-gated calcium channel alpha(2)delta-4
subunit, not fully spliced"
/db_xref="GOA:Q7Z3S7"
/db_xref="H-InvDB:HIT000054251.14"
/db_xref="HGNC:HGNC:20202"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR013608"
/db_xref="InterPro:IPR013680"
/db_xref="InterPro:IPR036465"
/db_xref="UniProtKB/Swiss-Prot:Q7Z3S7"
/protein_id="CAD97678.1"
/translation="MVCGCSALLPLPNPRPTMPATPNFLANPSSSSRWIPLQPMPVAW
AFVQKTSALLWLLLLGTSLSPAWGQAKIPLETVKLWADTFGGDLYNTVTKYSGSLLLQ
KKYKDVESSLKIEEVDGLELVRKFSEDMENMLRRKVEAVQNLVEAAEEADLNHEFNES
LVFDYYNSVLINERDEKGNFVELGAEFLLESNAHFSNLPVNTSISSVQLPTNVYNKDP
DILNGVYMSEALNAVFVENFQRDPTLTWQYFGSATGFFRIYPGIKWTPDENGVITFDC
RNRGWYIQAATSPKDIVILVDVSGSMKGLRMTIAKHTITTILDTLGENDFVNIIAYND
YVHYIEPCFKGILVQADRDNREHFKLLVEELMVNGVGVVDQALREAFQILKQFQEAKQ
GSLCNQAIMLISDGAVEDYEPVFEKYNWPDCKVRVFTYLIGREVSFADRMKWIACNNK
GYYTQISTLADTQENVMEYLHVLSRPMVINHDHDIIWTEAYMDSKLLSSQAQSLTLLT
TVAMPVFSKKNETRSHGILLGVVGSDVALRELMKLAPRYKLGVHGYAFLNTNNGYILS
HPDLRPLYREGKKLKPKPNYNSVDLSEVEWEDQAESLRTAMINRETGTLSMDVKVPMD
KGKRVLFLTNDYFFTDISDTPFSLGVVLSRGHGEYILLGNTSVEEGLHDLLHPDLALA
GDWIYCITDIDPDHRKLSQLEAMIRFLTRKDPDLECDEELVREVLFDAVVTAPMEAYW
TALALNMSEESEHVVDMAFLGTRAGLLRSSLFVGSEKVSDRKFLTPEDEASVFTLDRF
PLWYRQASEHPAGSFVFNLRWAEGPESAGEPMVVTASTAVAVTVDKRTAIAAAAGVQM
KLEFLQRKFWAATRQCSTVDGPCTQSCEDSDLDCFVIDNNGFILISKRSRETGRFLGE
VDGAVLTQLLSMGVFSQVTMYDYQAMCKPSSHHHSAAQPLVSPISAFLTATRWLLQEL
VL"
regulatory 5919..5924
/regulatory_class="polyA_signal_sequence"
polyA_site 5939
BASE COUNT 1441 a 1656 c 1632 g 1231 t
ORIGIN
1 gacagcctct cccccagtcc ctgcctccga ggcctgcttg ctaggtgggg cgactcttct
61 gtgagctgca gctgtggggc agagagaagc cctccccacc caggactgag aggctggaga
121 ccccaggctc gccaaggcac ggaagacaaa ggcctggggc gtcctggggt ctgggaggaa
181 ggcagacaga gctcatggtc tgtggctgct ctgccctcct tcccctcccc aaccccaggc
241 ccaccatgcc tgcaactccc aacttcctcg caaaccccag ctccagcagc cgctggattc
301 ccctccagcc aatgcccgtg gcctgggcct ttgtgcagaa gacctcggcc ctcctgtggc
361 tgctgcttct aggcacctcc ctgtcccctg cgtggggaca ggccaagatt cctctggaaa
421 cagtgaagct atgggctgac accttcggcg gggacctgta taacactgtg accaaatact
481 cgggctctct cttgctgcag aagaagtaca aggatgtgga gtccagtctg aagatcgagg
541 aggtggatgg cttggagctg gtgaggaagt tctcagagga catggagaac atgctgcgga
601 ggaaagtcga ggcggtccag aatctggtgg aagctgccga ggaggccgac ctgaaccacg
661 aattcaatga atccctggtg ttcgactatt acaactcggt cctgatcaac gagagggacg
721 agaagggcaa cttcgtggag ctgggcgccg agttcctcct ggagtccaat gctcacttca
781 gcaacctgcc ggtgaacacc tccatcagca gcgtgcagct gcccaccaac gtgtacaaca
841 aagacccaga tattttaaat ggagtctaca tgtctgaagc cttgaatgct gtcttcgtgg
901 agaacttcca gagagaccca acgttgacct ggcaatattt tggcagtgca actggattct
961 tcaggatcta tccaggtata aaatggacac ctgatgagaa tggagtcatt acttttgact
1021 gccgaaaccg cggctggtac attcaagctg ctacttctcc caaggacata gtgattttgg
1081 tggacgtgag cggcagtatg aaggggctga ggatgactat tgccaagcac accatcacca
1141 ccatcttgga caccctgggg gagaatgact tcgttaatat catagcgtac aatgactacg
1201 tccattacat cgagccttgt tttaaaggga tcctcgtcca ggcggaccga gacaatcgag
1261 agcatttcaa actgctggtg gaggagttga tggtcaatgg tgtgggggtc gtggaccaag
1321 ccctgagaga agccttccag atcctgaagc agttccaaga ggccaagcaa ggaagcctct
1381 gcaaccaggc catcatgctc atcagcgacg gcgccgtgga ggactacgag ccggtgtttg
1441 agaagtataa ctggccagac tgtaaggtcc gagttttcac ttacctcatt gggagagaag
1501 tgtcttttgc tgaccgcatg aagtggattg catgcaacaa caaaggctac tacacgcaga
1561 tctcaacgct ggcggacacc caggagaacg tgatggaata cctgcacgtg ctcagccgcc
1621 ccatggtcat caaccacgac cacgacatca tctggacaga ggcctacatg gacagcaagc
1681 tcctcagctc gcaggctcag agcctgacac tgctcaccac tgtggccatg ccagtcttca
1741 gcaagaagaa cgaaacgcga tcccatggca ttctcctggg tgtggtgggc tcagatgtgg
1801 ccctgagaga gctgatgaag ctggcgcccc ggtacaagct tggagtgcac ggatacgcct
1861 ttctgaacac caacaatggc tacatcctct cccatcccga cctccggccc ctgtacagag
1921 aggggaagaa actaaaaccc aaacctaact acaacagtgt ggatctctcc gaagtggagt
1981 gggaagacca ggctgaatct ctgagaacag ccatgatcaa tagggaaaca ggtactctct
2041 cgatggatgt gaaggttccg atggataaag ggaagcgagt tcttttcctg accaatgact
2101 acttcttcac ggacatcagc gacacccctt tcagtttggg ggtggtgctg tcccggggcc
2161 acggagaata catccttctg gggaacacgt ctgtggaaga aggcctgcat gacttgcttc
2221 acccagacct ggccctggcc ggtgactgga tctactgcat cacagatatt gacccagacc
2281 accggaagct cagccagcta gaggccatga tccgcttcct caccaggaag gacccagacc
2341 tggagtgtga cgaggagctg gtccgggagg tgctgtttga cgcggtggtg acagccccca
2401 tggaagccta ctggacagcg ctggccctca acatgtccga ggagtctgaa cacgtggtgg
2461 acatggcctt cctgggcacc cgggctggcc tcctgagaag cagcttgttc gtgggctccg
2521 agaaggtctc cgacaggaag ttcctgacac ctgaggacga ggccagcgtg ttcaccctgg
2581 accgcttccc gctgtggtac cgccaggcct cagagcatcc tgctggcagc ttcgtcttca
2641 acctccgctg ggcagaagga ccagaaagtg cgggtgaacc catggtggtg acggcaagca
2701 cagctgtggc ggtgaccgtg gacaagagga cagccattgc tgcagccgcg ggcgtccaaa
2761 tgaagctgga attcctccag cgcaaattct gggcggcaac gcggcagtgc agcactgtgg
2821 atgggccgtg cacacagagc tgcgaggaca gtgatctgga ctgcttcgtc atcgacaaca
2881 acgggttcat tctgatctcc aagaggtccc gagagacggg aagatttctg ggggaggtgg
2941 atggtgctgt cctgacccag ctgctcagca tgggggtgtt cagccaagtg actatgtatg
3001 actatcaggc catgtgcaaa ccctcgagtc accaccacag tgcagcccag cccctggtca
3061 gcccaatttc tgccttcttg acggcgacca ggtggctgct gcaggagctg gtgctgtgag
3121 tgggggtaga cacggggctg gtggagggct gcatgcgagg gtggcttagg agggtgtcct
3181 tgagcaggag gctgcaaggt ctccaggaca acccacttgc taccagaccc cggggaagga
3241 gggcacaatc cctgggcatg gacgccacct cttccctgca tgctgcccct gggagggacc
3301 tcattgctca accagagccc tcaagcaggg aagagggtgt cctggaggag aggggatggg
3361 ccgggggctg tcagggatac tccagctcct tgggaaccca agtcgggagg gctcagaggt
3421 ctccgagatt cagtcctgtg tctgacaggt tcctgctgga gtggagtgtc tggggctcct
3481 ggtacgacag aggggccgag ggtgagtgca cggagctgca gggccatgtg ctgaagagca
3541 gtggcatttt ggtccactaa cgtgagacca ttccctgtgg ggtgggtgac agtggggata
3601 ggtgaccctg aagcatcgtt gttcacatct caccctgcgt ggccttctct catcacatcc
3661 ctcactcctg gctctgtgtg tgacatcatc ttgggacacc gccactccat gtgccatcat
3721 caccacccca tgacatcctg ccctcatgtg ccaccatgtt ttcctgtgcc gtgtccaccc
3781 tgtgctgggc ttatgttccg gccagccaaa agtgtcttcc atcactccca caaacacaag
3841 aagcaggacc cgctgcagcc ctgcgacacg gagtaccccg tgttcgtgta ccagccggcc
3901 atccgggagg ccaacgggat cgtggagtgc gggccctgcc agaaggtatt tgtggtgcag
3961 cagattccca acagtaacct cctcctcctg gtgacagacc ccacctgtga ctgcagcatc
4021 ttcccaccag tgctgcagga ggcgacagaa gtcaaatata atgcctctgt caaatgtgac
4081 cggatgcgct cccagaagct ccgccggcga ccagactcct gccacgcctt ccatccagag
4141 gagaatgccc aggactgcgg cggcgcatcg gacacctcag cctcgccgcc cctactcctg
4201 ctgcctgtgt gtgcctgggg gctactgccc caactcctgc ggtgacacca cccagcctga
4261 cctgtgtttt ggcaaggtga tccttccaga gccatcccac aaagtcagca ctgacatggg
4321 atgcagctaa ctgcagttgg gtcgccccca ggccaacgct cctctcaatc ctgggctggt
4381 ggcccctggc tccggagaat gctggatgga acaggaaacc aatcacctgg caccactttc
4441 aagatgcttc atggtgcccg gtaccatctg ccctaggtct caacatgagc atacttctga
4501 cctaaccttc ctgtctcctc ttcgggaagc cagcgtgagc tcagcttgga ccaagacaaa
4561 ataatttagt tcttcctgta ctccagagtc cagacccagc caagaaaggg tcagttgttt
4621 ccgacccttt ctgtcggagt ggtctctggt agaacccaag gacttctggg tactgagaag
4681 cagcagcaga atgaggccaa atgcagagat gaggctaagg caagaatatg ccccaactaa
4741 agcatagatt ccccaaagtg aggctcatgg tgggaggcca ctcaccttcc tagctgctgc
4801 tcgaaaaggt tttgactgtg ttggggtggg ggttgggtaa gggaatggtc aagactgaga
4861 aaggaatgaa atccattcag gaaatatcga cagggctaca catgatgtcc ccaaactgct
4921 gctattgaag aacttcccaa aacttcttta caaagcccta aaggaaagtt tgcatctatg
4981 aaaagccaat aggctgagac atccaattgc tgcatggaaa ttgatgtaca ttcaggggac
5041 ggcaaaaata gctgtaaaat agtgaaaaag agcagtggtt gtgctctttt ctggccaatg
5101 atttacaaaa gaatctactt gactctgtcc ctggagtgaa atccttaggg ttggaacttg
5161 tgggaaacat tccaacttgc taagcagggt ccactgggag ggaagctcta tctgggaact
5221 cacccccagc gcacacacat ctcccccagg gtcccaaggc cccgcagctt cctcccccga
5281 ccaaacccca agacctggat cccaggagac aacagtctcc acagtgagag caacattaag
5341 ggcaaagcca tggagaaatg tgggagaggc cggcctcaaa tctttccatt taacaaaccc
5401 cagtgatggg tatggacagc atgcagggct tttggggcgc ttcccccgct cctccatcac
5461 cctcagcctc cacacttcaa agttcaagtt caaagctgtt caagtttcct accagcaaat
5521 agccctaact tgcctctaga gtaggccaaa tgccaactct gtaaaacaca cttacattat
5581 aggttacaga atgtcactct taccgtcatg tcttgcaaca accctgtgag gacagtatta
5641 atgccccctt acagcagaag acactgcagc tcggagaaga cagcttaagt ggcagaataa
5701 tgctagaaca gctaaggttt acatgtacca aataacatgt ttcagctcat tccatcctca
5761 caacagcccc ctgaaagtgg gtactatcat tagtcccatg ttatagaaac tgcagcagag
5821 ttgaaaattg cctccaaatt accggaagag tgtatgaaga ttgaatgtga tgtattcacg
5881 taacatgctt gaaactgcct ggcatatact aaacgctaaa taaatacatg ctaactgcga
5941 aaaaaaaaaa aaaaaaaaca
//