LOCUS BT026249 1979 bp mRNA linear MAM 14-JUL-2016
DEFINITION Bos taurus chaperone, ABC1 activity of bc1 complex like (S. pombe)
(CABC1), mRNA, incomplete 5' cds.
ACCESSION BT026249
VERSION BT026249.1
KEYWORDS FLI_CDNA.
SOURCE Bos taurus (cattle)
ORGANISM Bos taurus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
REFERENCE 1 (bases 1 to 1979)
AUTHORS Smith,T.P., Grosse,W.M., Freking,B.A., Roberts,A.J., Stone,R.T.,
Casas,E., Wray,J.E., White,J., Cho,J., Fahrenkrug,S.C.,
Bennett,G.L., Heaton,M.P., Laegreid,W.W., Rohrer,G.A.,
Chitko-McKown,C.G., Pertea,G., Holt,I., Karamycheva,S., Liang,F.,
Quackenbush,J. and Keele,J.W.
TITLE Sequence evaluation of four pooled-tissue normalized bovine cDNA
libraries and construction of a gene index for cattle
JOURNAL Genome Res. 11 (4), 626-630 (2001)
PUBMED 11282978
REFERENCE 2 (bases 1 to 1979)
AUTHORS Harhay,G.P., Sonstegard,T.S., Keele,J.W., Heaton,M.P.,
Clawson,M.L., Snelling,W.M., Wiedmann,R.T., Van Tassell,C.P. and
Smith,T.P.
TITLE Characterization of 954 bovine full-CDS cDNA sequences
JOURNAL BMC Genomics 6, 166 (2005)
PUBMED 16305752
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 1979)
AUTHORS Harhay,G.P., Sonstegard,T.S., Van Tassell,C.P., Clawson,M.L.,
Heaton,M.P., Keele,J.W., Snelling,W.M., Weidmann,R.T. and
Smith,T.P.L.
TITLE Sequencing and analysis of Bos taurus full-length insert cDNA
clones
JOURNAL Unpublished
REFERENCE 4 (bases 1 to 1979)
AUTHORS Harhay,G.P., Sonstegard,T.S., Van Tassell,C.P., Clawson,M.L.,
Heaton,M.P., Keele,J.W., Snelling,W.M., Weidmann,R.T. and
Smith,T.P.L.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2006) Molecular Genetic Research Unit, USDA-ARS
U.S. Meat Animal Research Center, P.O. Box 166, Spur 18D, Clay
Center, NE 68933
COMMENT Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
FEATURES Location/Qualifiers
source 1..1979
/organism="Bos taurus"
/mol_type="mRNA"
/db_xref="taxon:9913"
/clone="3BOV3J7; plate 3 row J column 7"
/tissue_type="pooled"
/clone_lib="3BOV"
/lab_host="Escherichia coli DH10B"
/note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
Library made from pooled tissue from marrow, alveolar
macrophage, ovary, fetal semitendonosus muscle, and fetal
longissimus muscle."
gene 1..1979
/gene="CABC1"
/note="putative, similar to GeneID: 56997"
CDS <1..1166
/gene="CABC1"
/codon_start=3
/product="chaperone, ABC1 activity of bc1 complex like"
/protein_id="ABG67088.1"
/translation="RIVRTLCKVRGAALKLGQMLSIQDDAFINPHLAKIFDRVRQSAD
FMPLKQMMKTLNNDLGPNWRDKLEYFEERPFAAASIGQVHLARLKGGREVAMKIQYPG
VAQSINSDVNNLMTVLNMSNMLPEGLFPEHLIDVLRRELALECDYQREAACARRFREL
LKDHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQEIRNEICYNILVLCLREL
FEFQFMQTDPNWSNFFYDPELHKVALLDFGATREFDRSFTDLYIQIIRAAANQDREAV
LKKSIEMKFLTGYEVKAMEDAHLDAILILGEAFASEEPFDFGTQSTTEKIHNLIPIML
KHRLVPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYSNYCRRQAEQQ"
repeat_region 1860..1880
/gene="CABC1"
/note="GC_rich"
BASE COUNT 436 a 549 c 558 g 436 t
ORIGIN
1 aacgcatcgt gcgcacgcta tgcaaggtgc gcggggcggc gctcaagctg ggccagatgc
61 tgagcatcca ggacgacgcc ttcatcaacc cccatctggc caagatcttc gatcgggtca
121 ggcagagtgc agacttcatg ccgctgaagc agatgatgaa aactctcaac aacgacctgg
181 gccccaactg gcgggacaag ctggagtact tcgaggagcg gcccttcgca gccgcctcca
241 tcgggcaggt gcacctggcc cgcttgaagg ggggccgcga ggtggccatg aagatccagt
301 accctggcgt ggcccagagc atcaacagtg acgtcaacaa cctcatgacc gtgctgaaca
361 tgagcaacat gcttccggaa ggcctgttcc ccgagcacct gatcgacgtg ctgcggcggg
421 agctggccct cgagtgcgac taccagcggg aggccgcttg cgcccgcagg ttcagggagc
481 tactgaagga ccaccccttc ttctacgtgc ccgagatcgt ggacgagctc tgcagccccc
541 acgtgctgac cacggagctg gtgtccggct tccccctgga ccaggccgag gggctgagcc
601 aggagatccg aaacgagatc tgctacaaca tcctggtact gtgcctgcgg gagctgttcg
661 aattccagtt catgcagaca gaccccaact ggtccaactt cttttatgac cctgagctgc
721 acaaggtggc tcttctggac ttcggggcaa ctcgggaatt tgacagatcc ttcaccgacc
781 tctacatcca gatcatcagg gctgctgcta accaggacag ggaggctgta ctgaagaaat
841 ccatagagat gaagttcctt accggctatg aggtcaaggc catggaagac gcccacttag
901 atgccatcct catcctgggg gaggcctttg cctcggagga gccctttgac tttgggaccc
961 agagcaccac cgagaagatc cacaacctga tccccatcat gctgaagcac cggctcgtcc
1021 cgccgccgga ggagacctac tccctgcaca ggaagatggg cggctccttc ctcatctgct
1081 ccaagctgaa ggcccggttc ccctgcaagg ccatgttcga ggaggcctac agcaactact
1141 gcaggaggca ggccgagcag cagtagcagg accctccggc ctcggtcctt gagccgctga
1201 aactagtagg aagctggtgg tgcccgcgct gcatttaaac ttcgcccagt gggagagggt
1261 ggccgggctg atggggggga cgctgctcgg agcccgttgc ccgcgcttat acacggtttt
1321 cttgctaagt ggctgtgggg tgagaggagc aaggatgaaa atgtagcccc actactgtct
1381 gtcagaatct gcttattgtt tagtaatcct ctgaaatgac tctcgataaa aagacaattt
1441 tatttcctct tcctttttgt aacaggggtt ttttgctaat gtgaacgtta gccagaagat
1501 aagagttctt cctttgaatc ctgccaccaa aaacaaaaac aaaacaccaa aaccagaaaa
1561 gcctttttgg attttattga atgtgtaata tcaggtttgt gtgtgtgtgt gtttctagaa
1621 tgagatttgt attttttgcc ttttcctctc tggcctggat ctagaagtgc tgagctgagc
1681 agtgccaaca agtactactt tgccaagcca ggtccaccca cacctgccct ctggctggtt
1741 gctagaggct ttcttgagaa cctgaggttt ccagagaact gccgcctcct acggggagga
1801 caggagccac agaaggagag agggccacat gcgctgtccc tgggctccaa gactggtgtg
1861 cgggggggcg ggccggggcc ttgatgtgca catatcacct gcttggaccc aaggggtcat
1921 ttcaggctgt gttaatattc gtacaattct tgtaattgtc tgatttactt gtttcaatt
//