LOCUS BT009776 2481 bp mRNA linear HUM 02-AUG-2003 DEFINITION Homo sapiens hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) mRNA, complete cds. ACCESSION BT009776 VERSION BT009776.1 KEYWORDS FLI_CDNA. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2481) AUTHORS Kalnine,N., Chen,X., Rolfs,A., Halleck,A., Hines,L., Eisenstein,S., Koundinya,M., Raphael,J., Moreira,D., Kelley,T., LaBaer,J., Lin,Y., Phelan,M. and Farmer,A. TITLE Direct Submission JOURNAL Submitted (17-JUL-2003) BD Biosciences Clontech, 1020 East Meadow circle, Palo Alto, California 94303, USA REFERENCE 2 (bases 1 to 2481) AUTHORS Kalnine,N., Chen,X., Rolfs,A., Halleck,A., Hines,L., Eisenstein,S., Koundinya,M., Raphael,J., Moreira,D., Kelley,T., LaBaer,J., Lin,Y., Phelan,M. and Farmer,A. TITLE Direct Submission JOURNAL Submitted (02-AUG-2003) BD Biosciences Clontech, 1020 East Meadow circle, Palo Alto, California 94303, USA COMMENT This CDS clone is a part of a collection of human full length expression clones generated by BD Biosciences Clontech and the Harvard Institute of Proteomics. Each CDS has been cloned in two forms: with and without stop-codon (to allow fusion with C-terminal tag). The CDS has been directionally cloned using BD In-Fusion(TM) cloning system between the SalI and HindIII sites of the pDNR-DUAL vector. Additional sequences in the clone: 'ACC' after SalI site and before 'ATG' to provide Kozak consensus sequence; 'GG' after last codon and before HindIII site to maintain reading frame. Clone distribution: http://bioinfo.clontech.com/orfclones. FEATURES Location/Qualifiers source 1..2481 /db_xref="H-InvDB:HIT000266338" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="GH01043X1.0" /clone_lib="BD Creator(TM) CDS Library derived from MGC collection" /lab_host="DH5alpha T1 resistant" /note="Vector: pDNR-Dual" CDS 1..2481 /codon_start=1 /product="hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" /protein_id="AAP88778.1" /translation="MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQL PLPHNVSSHLDKASVMRLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMV LTDDGDMIYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKE QNTQRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMT CLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIY EYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQC IVCVNYVVSGIIQHDLIFSLQQTECVLKPVESSDMKMTQLFTKVESEDTSSLFDKLKK EPDALTLLAPAAGDTIISLDFGSNDTETDDQQLEEVPLYNDVMLPSPNEKLQNINLAM SPLPTAETPKPLRSSADPALNQEVALKLEPNPESLELSFTMPQIQDQTPSPSDGSTRQ SSPEPNSPSEYCFYVDSDMVNEFKLELVEKLFAEDTEAKNPFSTQDTDLDLEMLAPYI PMDDDFQLRSFDQLSPLESSSASPESASPQSTVTVFQQTQIQEPTANATTTTATTDEL KTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYRDTQSRTASPNRAGKGVIEQTEK SHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKRKMEHDGSLFQAVGIGTLLQQ PDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLACRLLGQSMDESGLPQLTSY DCEVNAPIQGSRNLLQGEELLRALDQVN" BASE COUNT 829 a 512 c 500 g 640 t ORIGIN 1 atggagggcg ccggcggcgc gaacgacaag aaaaagataa gttctgaacg tcgaaaagaa 61 aagtctcgag atgcagccag atctcggcga agtaaagaat ctgaagtttt ttatgagctt 121 gctcatcagt tgccacttcc acataatgtg agttcgcatc ttgataaggc ctctgtgatg 181 aggcttacca tcagctattt gcgtgtgagg aaacttctgg atgctggtga tttggatatt 241 gaagatgaca tgaaagcaca gatgaattgc ttttatttga aagccttgga tggttttgtt 301 atggttctca cagatgatgg tgacatgatt tacatttctg ataatgtgaa caaatacatg 361 ggattaactc agtttgaact aactggacac agtgtgtttg attttactca tccatgtgac 421 catgaggaaa tgagagaaat gcttacacac agaaatggcc ttgtgaaaaa gggtaaagaa 481 caaaacacac agcgaagctt ttttctcaga atgaagtgta ccctaactag ccgaggaaga 541 actatgaaca taaagtctgc aacatggaag gtattgcact gcacaggcca cattcacgta 601 tatgatacca acagtaacca acctcagtgt gggtataaga aaccacctat gacctgcttg 661 gtgctgattt gtgaacccat tcctcaccca tcaaatattg aaattccttt agatagcaag 721 actttcctca gtcgacacag cctggatatg aaattttctt attgtgatga aagaattacc 781 gaattgatgg gatatgagcc agaagaactt ttaggccgct caatttatga atattatcat 841 gctttggact ctgatcatct gaccaaaact catcatgata tgtttactaa aggacaagtc 901 accacaggac agtacaggat gcttgccaaa agaggtggat atgtctgggt tgaaactcaa 961 gcaactgtca tatataacac caagaattct caaccacagt gcattgtatg tgtgaattac 1021 gttgtgagtg gtattattca gcacgacttg attttctccc ttcaacaaac agaatgtgtc 1081 cttaaaccgg ttgaatcttc agatatgaaa atgactcagc tattcaccaa agttgaatca 1141 gaagatacaa gtagcctctt tgacaaactt aagaaggaac ctgatgcttt aactttgctg 1201 gccccagccg ctggagacac aatcatatct ttagattttg gcagcaacga cacagaaact 1261 gatgaccagc aacttgagga agtaccatta tataatgatg taatgctccc ctcacccaac 1321 gaaaaattac agaatataaa tttggcaatg tctccattac ccaccgctga aacgccaaag 1381 ccacttcgaa gtagtgctga ccctgcactc aatcaagaag ttgcattaaa attagaacca 1441 aatccagagt cactggaact ttcttttacc atgccccaga ttcaggatca gacacctagt 1501 ccttccgatg gaagcactag acaaagttca cctgagccta atagtcccag tgaatattgt 1561 ttttatgtgg atagtgatat ggtcaatgaa ttcaagttgg aattggtaga aaaacttttt 1621 gctgaagaca cagaagcaaa gaacccattt tctactcagg acacagattt agacttggag 1681 atgttagctc cctatatccc aatggatgat gacttccagt tacgttcctt cgatcagttg 1741 tcaccattag aaagcagttc cgcaagccct gaaagcgcaa gtcctcaaag cacagttaca 1801 gtattccagc agactcaaat acaagaacct actgctaatg ccaccactac cactgccacc 1861 actgatgaat taaaaacagt gacaaaagac cgtatggaag acattaaaat attgattgca 1921 tctccatctc ctacccacat acataaagaa actactagtg ccacatcatc accatataga 1981 gatactcaaa gtcggacagc ctcaccaaac agagcaggaa aaggagtcat agaacagaca 2041 gaaaaatctc atccaagaag ccctaacgtg ttatctgtcg ctttgagtca aagaactaca 2101 gttcctgagg aagaactaaa tccaaagata ctagctttgc agaatgctca gagaaagcga 2161 aaaatggaac atgatggttc actttttcaa gcagtaggaa ttggaacatt attacagcag 2221 ccagacgatc atgcagctac tacatcactt tcttggaaac gtgtaaaagg atgcaaatct 2281 agtgaacaga atggaatgga gcaaaagaca attattttaa taccctctga tttagcatgt 2341 agactgctgg ggcaatcaat ggatgaaagt ggattaccac agctgaccag ttatgattgt 2401 gaagttaatg ctcctataca aggcagcaga aacctactgc agggtgaaga attactcaga 2461 gctttggatc aagttaacta g //