LOCUS BG088913 654 bp mRNA linear EST 12-MAY-2010 DEFINITION H3159C06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3159C06 5', mRNA sequence. ACCESSION BG088913 VERSION BG088913.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 654) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088913.1. Other_ESTs: H3159C06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3159 row: C column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..654 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3159C06-5" /db_xref="taxon:10090" /clone="H3159C06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 177 a 165 c 115 g 197 t ORIGIN 1 aatcttccct gaagttagca tacatttcta tcttgtaatc ccagctcaat gccttctaaa 61 tctattttgt atttttgctg ccctgttacc ttttgggcag ccccctgccc accatagggc 121 cacttccctt tttacctaca ttgctcttga attgcagctc ttgaaactga tacctcgcct 181 tctgagtctt ggtgattctc cccctccttt cttctctcca gatcccttgc ccttgatatc 241 taaacatccc accccgtctc cttgcccagc cattggctgt atggaaattc tttattatca 301 attgaaagca gctgggggta gaaactctca ggtctagaag tgcagatttt gggagctgaa 361 gcaagacaaa gcattagaac caattcccat catcttccca ccaaagttat accaaaagtg 421 taggaattag aattctgtgt caccatgtct tggtgttttc tgttgtggta attaaactga 481 agactaatag tctcccaaaa cacacacaca cacacacaca cacacacatg ggggcatggg 541 catgatcaca tagatgcatg cataaaagtt ctttccactg ctgaatgctt ggatcatgtg 601 ttcaagataa aagcttggag acgaagaatt tgtaataagc ataaaaacag gttc //