LOCUS BG088555 679 bp mRNA linear EST 12-MAY-2010 DEFINITION H3154F04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3154F04 5', mRNA sequence. ACCESSION BG088555 VERSION BG088555.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 679) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088555.1. Other_ESTs: H3154F04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3154 row: F column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..679 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3154F04-5" /db_xref="taxon:10090" /clone="H3154F04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 203 a 105 c 123 g 248 t ORIGIN 1 gttgagattt ttaaaaaagc ccgtgggact caatgctact tatattttaa actgtgatat 61 taacatcaac atgtaatttg gggggggggc aaataaagaa aaggttatgg cttcatactg 121 atgagcttgt gtgtcaggat gatgagagat caattatgct cgttcatttt tgacaacttg 181 acataaacct aagatatata tatggcagga aagttagttg aaatagatgc taaaacaaaa 241 agacaaaggg aataagttct cctataaatg atgtaaccat catcatgcac aactcaggct 301 tatagaatag gattcttagt gctgggaagg gatgctgact ggccgccaac gtctctttag 361 ttcgtatgct ttcaatcaga gttcatattt tgtttcgttt taaattaaaa tatacttatg 421 tcatcccctt ccttctcctt cctctgccct ctcccatgtt cccctactcc ctctcaaatt 481 catccttctt gttctttaat tagtatcatt atacacatat atgaataaac ataaatacaa 541 gttgttgagt ctatttagtg ttgttgtatg ttggagttca tattttgtta atgatatttt 601 agtgtgtgaa tatgatttga gcttttaata tcatgaattt atggaatatt tgatgtgtga 661 aaaattttgt ttcttgtat //