LOCUS BG088550 643 bp mRNA linear EST 12-MAY-2010 DEFINITION H3154E10-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3154E10 5', mRNA sequence. ACCESSION BG088550 VERSION BG088550.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 643) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088550.1. Other_ESTs: H3154E10-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3154 row: E column: 10 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..643 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3154E10-5" /db_xref="taxon:10090" /clone="H3154E10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 140 a 199 c 167 g 137 t ORIGIN 1 gtgtgacgct gctttctcgt tcagaatgtc atacccaggc tatcccccca ccggctaccc 61 gcctttccct ggatatcctc ctgcaggtca ggagtcatct ttccccactg cgggtcagta 121 cccgtaccct agtggctttc caccaatggg aggaggtgct tacccaccag caccaagtgg 181 tgggtatcca ggagctggag gctaccccgc acctggaggt tatccagccc ctgggggcta 241 tcctggagcc ctaagtccag ggggtcctcc agcctatcct ggaggccaag gctttggggc 301 cccacccggt ggagcaggct tttctggcta tccacagcca cctgcacagt cttatggtgg 361 cggcccagcc caggttccag taccaggtgg ctttcctgga ggacagatgc catctcagta 421 ccctggagga caagctccct accctagcca gcccgcttcg atgactcagg gcacccaagg 481 aacaatcctc ccagcctcca actttgatgc tatgagagat gcagaaattc tccgcaaagc 541 aatgaaaggg tttgggacag acgagcaagc aattgtggat gttgtgtcta accgttccaa 601 tgaccagagg caacaaatca aagcagcttt taagaccatg tat //