LOCUS BG088547 691 bp mRNA linear EST 12-MAY-2010 DEFINITION H3154E03-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3154E03 5', mRNA sequence. ACCESSION BG088547 VERSION BG088547.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 691) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088547.1. Other_ESTs: H3154E03-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3154 row: E column: 03 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..691 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3154E03-5" /db_xref="taxon:10090" /clone="H3154E03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 175 c 186 g 171 t ORIGIN 1 ccagctcctg gctcttctct ctaacccact gacttgatca aggttgttgc tagtgactgt 61 gggctgctcg gtcttggttc tgtaactgct tgtcttccta caggagcttc ccagggggat 121 ggggccatag tagttgtggg gaggagagac acggggctaa gctgggtgcg tgcattggtt 181 tgaaagggat ctcagcaagt ggaggcctgg ccagtatggt gtgaagaagc aagcctaaga 241 ccacaaaaga cttctaagaa tggctatgga ggagggcttt aacgctcatc tgcacactca 301 aagaacctct ccatccttgc ccccacccca ccccaccctt caggaagcaa gctatgagaa 361 tgtaaaggct ggtgctggac atcttcaaat cctctctgaa actggctggg atgtcaggct 421 accatgcgag ggccagggga cagggatgga ctatatactg ccaccggaca ggcatggctg 481 ggcctagtct tcccacacgc accaggagaa ataaggaaga tggaagttgt tgaagggaca 541 tgttggctct tcagaaaagc tgcctggcat ctctccagag cccagccttc tcgcccccaa 601 agaattctgc cttctctatt tattattttc tatagcttcc cagtggttct ggtactgtgt 661 gcctttgtaa ccagattcca acagtgcttt g //