LOCUS BG088129 614 bp mRNA linear EST 12-MAY-2010 DEFINITION H3149A06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3149A06 5', mRNA sequence. ACCESSION BG088129 VERSION BG088129.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 614) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088129.1. Other_ESTs: H3149A06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3149 row: A column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..614 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3149A06-5" /db_xref="taxon:10090" /clone="H3149A06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 137 a 176 c 170 g 131 t ORIGIN 1 ggatgagaaa gtgtccaaga atctggctac acagctggac tcagccttca tccggaagga 61 gcccttcggt ctggtgcttg tcatcgtgcc ctggaattat cccattaacc tgacactcgt 121 gccgctggtg ggggccatag ctgcagggaa ttgtgtggtg ctcaagccct cagagatcag 181 caaggccact gaaaagatac tggccgaggt cctgccccgc tatctggacc agagctgctt 241 tactgtggta ctgggtgggc gtcaggagac cgggcagctg ctggaacaca agttcgacta 301 catcttcttc acagggaatg cttatgtagg caagatcgtc atggctgctg ctgccaaaca 361 cctgacaccc atcaccctgg agctgggggg taagaacccc tgctatgtgg atgacaactg 421 cgacccccag atagtggcca accgtgtggc ctggttccgc tactttaatg ccggccagac 481 ctgtgtggcc cccgattata tcctgtgtag ccaggagatg caggagcggt tggtgcctgc 541 cctacagaat gccatcacac gtttctatgg agacaaccca cagacctccc ccaacctggg 601 cagaatcatc aacc //