LOCUS BG087990 661 bp mRNA linear EST 12-MAY-2010 DEFINITION H3147C09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3147C09 5', mRNA sequence. ACCESSION BG087990 VERSION BG087990.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 661) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG087990.1. Other_ESTs: H3147C09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3147 row: C column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..661 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3147C09-5" /db_xref="taxon:10090" /clone="H3147C09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 189 a 149 c 176 g 147 t ORIGIN 1 ccagtacagt gtacactgca gacctgtagc cgacactgct cattcctaag aggcagggtt 61 ttgtgattga catttgatag ctacttcagc cttccttggg ggcatattct caactgagag 121 cccggttgtt gtcccatgag caagagcatt tggccatctg gaaaaggttc tggttgtccc 181 aggcacgttg gtattggcag cgggtggata gcagcaaggg atgctgataa caacccttgg 241 tgcagtagac aggctcccag aaaaggacaa tcaggtccaa aacatccatg ttctgggctg 301 gcaacatggc ttgagcgcag gcacccgcag gcaagcctga tgacttgagt tcagtccctg 361 ggaccactat ggtaccagga gagacctgac aattacaggt tgtcctctta tctcagacag 421 gcgtggacaa agtaagaaaa tatttgtgta ccgagtttga aaaaaggagc aatccttaac 481 tgagcggtgg attttaatcc acctttaatc ccagcacttg ggaggcagag gcagggggat 541 caaggccagc ctggtctaca gatcaagtac gaagaaatgt agtctcaaaa aaaacaaaca 601 aaaacaagga ctgctaagtc catgctccct ggtatataaa taggaggcca tcacagggga 661 g //