LOCUS BG087724 643 bp mRNA linear EST 12-MAY-2010 DEFINITION H3142G09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3142G09 5', mRNA sequence. ACCESSION BG087724 VERSION BG087724.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 643) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG087724.1. Other_ESTs: H3142G09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3142 row: G column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..643 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3142G09-5" /db_xref="taxon:10090" /clone="H3142G09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 174 a 145 c 171 g 153 t ORIGIN 1 ggagcccatc atggtcttcc tcacgacgcg gctctggctg cggaaccgcc tcaccgatcg 61 ctattggcgg gttcaggagg tgctgaaaca cgctcagcat tttcggggaa ggaagaatcg 121 ctgctaccgc ctggccgtca gggcggtgac cagagccttc gttaagtgta cgaaggcccg 181 cagacttaag aagcggaacc tgaggaccct ctggattaat cgaattacag ctgcctccca 241 ggaacatggc ttaaagtacc cagcattcat tgtcaactta attaagtgcc aggtggagct 301 caacaggaaa gttcttgtgg acctggccat ctatgaacca aagacgttta aatctttggc 361 tgcattggct aagcggaggc aacaggaggg atttgctgca gctttggggg atggaaagga 421 gcctgaaggt atcttttcca gagtggtgca gtaccactga aggctgcagt gctatagact 481 gttataaaca agataggacc aaaaggactg tcaccagtaa gtctgatttg tatttattta 541 cattttagca acaggcctga gacgacaggt ctttattcag tgacacggcc ccaaactgtc 601 ctgtaaagat tgtataaata aagcctttgc agtgttaaaa aaa //