LOCUS BG087193 649 bp mRNA linear EST 12-MAY-2010 DEFINITION H3136F06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3136F06 5', mRNA sequence. ACCESSION BG087193 VERSION BG087193.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 649) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG087193.1. Other_ESTs: H3136F06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3136 row: F column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..649 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3136F06-5" /db_xref="taxon:10090" /clone="H3136F06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 211 a 143 c 130 g 165 t ORIGIN 1 cccagccatg tccgtccgtg aaaactcagg ttccaggccg ggaacttcta tgaaagtttg 61 tacagagctg tatttttggt gagctttctc agtgctttcc aatatgcaaa ctaactgggt 121 tatgtacctc aaacaaacaa acacatacag gagatagaat gcaggattat aatcaagtcc 181 tgtcagtaga tgtttgctat taagtaggaa ataacatgaa attagcatag gaaatattgc 241 cttaattcta aacacacatg gggagatcac acatgcgcac atgcaccctc tgtgtgctcc 301 taaagcacct tgcaatctga ctccaatcct aaaaatcaaa taaaaaaccc ttaatcaggc 361 tgtaaatcaa atgacactat gcgatgtcac tacagtgaca tcagacatca tataggaatc 421 ataattttct attttaagat ttttaattct gtgtgtacat gtgactgcag tacacacagc 481 caacaagtgc accagagacc ctacagctgg acttataggc agttctatgc cgccctgcgg 541 atgctgagaa ccaacccgac ctcgatcctc tgcagtccat gtagttaaca tgcaagaagg 601 ggtggtaagg caaaagcagc catgaaaaag ggtgagggaa atatgtcct //