LOCUS BG086550 659 bp mRNA linear EST 12-MAY-2010 DEFINITION H3127F08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3127F08 5', mRNA sequence. ACCESSION BG086550 VERSION BG086550.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 659) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG086550.1. Other_ESTs: H3127F08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3127 row: F column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..659 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3127F08-5" /db_xref="taxon:10090" /clone="H3127F08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 169 a 148 c 139 g 203 t ORIGIN 1 actgtaaaaa aatctctagt ttcaggctga tgagatgtct cagcaggtaa aggtgtgtgt 61 tgtataactc tgacaacctg acctcaatcc ccagaaccca tggtggaggg aagagccagc 121 tcctgaaagt tcccctctaa tctccatgtg agcccacctg agtgctcctg tacatacaca 181 ggccacacag tccttattta gtgtgtatgc gtcttttgcc tacatatatg tctgcaccat 241 gtgcatggag tacccaagga ggtagagtaa aataggccat taagtggatt tcctgtgatt 301 gaaattgaga gacttttatg agctattatg taggtgcatc aaacctgggt cctctggaat 361 aacaatcagt gctcttaacc tctgattcag ttctccactt tctgccccac cccctgcaag 421 ttaaataaaa ataaaaataa aaatttctag cttcatacct aaggaaaaaa atctatctga 481 aaggattttt gtgccccacc cccttgtttc aatggctttc ttcccttgac ctttcctatc 541 cagcggtgtg ttgggtgcgt tgatttagat acgtttatgt tctctgttta ggcccaagaa 601 ggaagctttg gtggtggtgt cttgacactt gggtcatgtt cagttcctta cagtctggt //