LOCUS BG086173 605 bp mRNA linear EST 12-MAY-2010 DEFINITION H3122F05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3122F05 5', mRNA sequence. ACCESSION BG086173 VERSION BG086173.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 605) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG086173.1. Other_ESTs: H3122F05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3122 row: F column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..605 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3122F05-5" /db_xref="taxon:10090" /clone="H3122F05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 126 a 178 c 200 g 101 t ORIGIN 1 agcagggcgc gcgcggtggc ggcggcgcag gtctcccagc cagagtcccc acttctggct 61 gctcatgcca ctgggactgg ggcgaaggaa gaaagcaccg cctctggtgg aaaatgagga 121 ggcggagcca agccggagtg ggctgggtgt tggggagcct gggcccctgg gtgggagcgc 181 agcaggagaa tcccagatgg gcttgccccc acctcctgct gccctccggc ctcgcctcgt 241 gttccatacc cagctggccc acggcagccc cacaggccgc atcgagggct tcactaatgt 301 caaggagctg tacggcaaga tcgctgaggc cttccgacta ccagctgctg aggtgatgtt 361 ctgcaccctc aacacccaca aagtggacat ggacaaactc ctggggggcc agatcggcct 421 ggaagacttc atctttgccc atgtgaaggg gcagcgcaaa gaggtggaag tgttcaagtc 481 ggaggaggct ctggggctca ccatcaccga caacggggcc ggctacgcct tcattaagcg 541 catcaaggaa ggcagtgtga ttgaccacat tcagctcatc agcgtggggg acatgattga 601 agcca //