LOCUS BG086080 726 bp mRNA linear EST 12-MAY-2010 DEFINITION H3121E09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3121E09 5', mRNA sequence. ACCESSION BG086080 VERSION BG086080.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 726) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG086080.1. Other_ESTs: H3121E09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3121 row: E column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..726 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3121E09-5" /db_xref="taxon:10090" /clone="H3121E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 221 a 155 c 150 g 200 t ORIGIN 1 ctttggaccg ggctgaatct ccggatttcc catacctgaa tactctatta aggatactgg 61 ccactcgctg tatgatgcaa gctgtgtact tctgctctgg gatggataat gattttcatc 121 actatggctt agcctccccc atatacacac atttcacctc tcctatcaga agatatgcag 181 acataattgt ccatcggcta ttagctgtgg cgattggggc tgactgtact taccctgagt 241 tgacagacaa acacaagctt tcagatatat gtaaaaacct caatttccgg cataaaatgg 301 ctcagtatgc ccagcgtgct tcggtggctt ttcatacaca gttgtttttc aaaagcaaag 361 gaatagtaag tgaagaagcc tatattctct ttgtaaggaa aaatgcaatt gtggtgttaa 421 ttccaaagta tggcttagaa ggtacagttt tctttgaaga aaaagataaa ccaaagccac 481 gccttgctta cgatgatgag atcccttccc tgagaataga aggtacagtg ttccatgtgt 541 ttgataaggt taaagtgaag atcacattag attcatcaaa tcttcaacat cagaaaatcc 601 gcatggccct tgtagaacca cagatcccag gaataaatat tcctcccaat gttgcagaca 661 aggctcttac tgcaccaggg ggaaagaaga ggaagcttga gaagtagcta cgttcaacag 721 aacatc //