LOCUS BG085936 686 bp mRNA linear EST 12-MAY-2010 DEFINITION H3119H04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3119H04 5', mRNA sequence. ACCESSION BG085936 VERSION BG085936.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 686) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085936.1. Other_ESTs: H3119H04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3119 row: H column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..686 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3119H04-5" /db_xref="taxon:10090" /clone="H3119H04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 208 a 117 c 141 g 220 t ORIGIN 1 gaaaatgagg tccttaaagt gctttctgaa gctgctattt cagcaagtct ggaaaagttt 61 gaaattccac taaaaatacg tttgagccct gacccatgga ctcccgaaac tggtctggtg 121 acagatgcct tcaagttgaa acgtaaagag cttaaaacac actaccaggc agacattgag 181 cggatgtatg gaagaaaata attagttttg gcattggttt gctacagcga gctcagatca 241 aataggaaaa tacttgaaat gtatgtctcg ggccgaggca aactccattc ctcatattaa 301 atcccggctg ttacttctca ctacgtcacc atttttaact gacaggatta gtaaagtatt 361 aagacagcaa actcgtgtct gtctgttcct tcccctgctc cagtttgctt ctggcatctg 421 tgactgtgct tgtcaacagg agactttttc agaatcgtac tggggaagca gcgattttac 481 agcctcaagt ttttaaacat gatttatatg ttctgtacag ttgttcagtt tgtaactttt 541 taaagtttgg atgtatagaa ggataaatag gaaatataaa aattggttat ttggggggct 601 tttttactta ttgtatttaa aaataaaagg gtatcaatgt gaaattatgt acattttaaa 661 tgcttatgaa tcaagtcatt gttgaa //