LOCUS BG085279 594 bp mRNA linear EST 26-JAN-2001
DEFINITION H3111A07-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3111A07 5', mRNA sequence.
ACCESSION BG085279
VERSION BG085279.1
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 594)
AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A.,
Tanaka,T.S., Carter,M.G. and Ko,M.S.H.
TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set
JOURNAL Unpublished
COMMENT Other_ESTs: H3111A07-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3111 row: A column: 07
Seq primer: -21M13 Reverse
POLYA=No.
FEATURES Location/Qualifiers
source 1..594
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3111A07-5"
/db_xref="taxon:10090"
/clone="H3111A07"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 129 a 132 c 130 g 202 t
ORIGIN
1 tcctttctgg aacttggatt acccactaca agactgagaa tcagtgtctt ttgtttgttt
61 ggtttttttt tttttttttt taagacaggg tttctatgta gccatggatg tcctggaact
121 tgctctgttg accaggctgg cctctaactc agagatctgc ctgcccctgc ctcccaagta
181 ctgggatcaa acatgtgtat caccactgcc tggctaaccc ttcacttctt aagtgagttt
241 tagtgtttaa aatgcaactt aattttcaaa atggcactaa ggtggtttgt ccagccttgg
301 tttactccag atgagcagca gccctcaaca gtgtgttgat tgaactcatc tggctgcagt
361 gaaatggctg aaagtgagat tttctagtgc atacttctgt gctagcctcc ctacttggtc
421 ttaatggctg accttgggca agtctttcct ttcaatgcct cagttcccca tctgtcaaat
481 ggggtgataa tactgaccta cctcatggng gtgttgtgag gcattacaga tcagagctga
541 tcaactcctt taggattgcc tgtggaggat accttcagtc gaagtttttt tagc
//