LOCUS BG085209 666 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109H01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109H01 5', mRNA sequence. ACCESSION BG085209 VERSION BG085209.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 666) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085209.1. Other_ESTs: H3109H01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3109 row: H column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..666 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109H01-5" /db_xref="taxon:10090" /clone="H3109H01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 140 a 164 c 213 g 149 t ORIGIN 1 tgaaccctct gagactgtgg agatgtttga gggtgagaag ttctttgcag cctttgagcg 61 gggcattgat gtagatgcag accgtccaga ctgtgtggat ggcagaatct gctttgtctt 121 ctattcacac ctgaagaacg taaaggaggt atacatcacc acagccttgg accgggaagc 181 tcaggatgtt cgaggacagg tgtcctttta tcggggttca cttcctgtgg aggtacctgc 241 agaggcagag gctgcccggc agaggaaggg tacagatgca ctgtggatgg ccaccttgcc 301 catcaagcta ccgagactcc ggggtgccca ggggagtggg caggggactg acttctcctt 361 gatgcctctg aacctgggtg atgcagaaac tggattcctg actcagagca acctgctgag 421 tgtggcctca cgcctaggtc ctgactggcc agctgtggcc ctgcacctag gcatgcccta 481 ccataagcta cagcgtatcc ggcatgaatt cagggatgac ctggatggcc aggtccgaca 541 catgctcttc tcttgggctg agcgccagac tggacagcct ggagctgtgg gacacctggt 601 acaggccttg gaacagagtg atcggcggga tgtggctgaa gaggtgcatg ccatcttgga 661 gcttgg //