LOCUS BG085195 618 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109F07-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109F07 5', mRNA sequence. ACCESSION BG085195 VERSION BG085195.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 618) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085195.1. Other_ESTs: H3109F07-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3109 row: F column: 07 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..618 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109F07-5" /db_xref="taxon:10090" /clone="H3109F07" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 186 a 116 c 125 g 191 t ORIGIN 1 aggaaatgtg tattaccagt ggggttttag ctgttcaatc aaaataataa caaatgtaca 61 atttagcata acaaatcaga gagcctctcc agagaagttg gtttctttgc tgcgagaagg 121 aggttctgaa accttatcca agaacagaag ccatcagcca agtctccaca tttctctgca 181 aaatgtcata gcctctctaa ctgtatgata attgtaatgc atgccttcag ttgtaagtgg 241 ccagattgct ctacagtgac attgaaacat gctttctaat gggccctgta cagtttgctt 301 atttataaat tcatttaaaa cactacagct gctgaatggt tacaacatag gcctccagtc 361 ctaacttcag ttgtttaggt gtgcagccag ctgttccaca ctgtattatt gtaacttatt 421 taatgaagtc agaagcagta gacagatgtt ggtgcaatac aagtattgtg tgcatttatc 481 gtaataaagt gctcagcgtc agttcagttg ctcacagctt ctcacagcgc atgtttgact 541 gtagtctgta aatagaggtc agtttctgtg ctggtaacag gtattgcaca gacatgattt 601 caggtaaata aaaaaatt //