LOCUS BG085167 676 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109D03-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109D03 5', mRNA sequence. ACCESSION BG085167 VERSION BG085167.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 676) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085167.1. Other_ESTs: H3109D03-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3109 row: D column: 03 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..676 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109D03-5" /db_xref="taxon:10090" /clone="H3109D03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 204 a 160 c 128 g 184 t ORIGIN 1 caactacact cactccaact tcaacaccca ctccaactcc aactccaact ccaaccgttg 61 gaaactacag cattagaaat ggcaatacta cctgtctgct ggctaccatg gggctgcagc 121 tgaacatcac tgaggagaag gtgcctttca tttttaacat caaccctgcc acaaccaact 181 tcaccggcag ctgtcaacct caaagtgctc aacttaggct gaacaacagc caaattaagt 241 atcttgactt tatctttgct gtgaaaaatg aaaaacggtt ctatctgaag gaagtgaatg 301 tctacatgta tttggctaat ggctcagctt tcaacatttc caacaagaac cttagcttct 361 gggatgcccc tctgggaagt tcttatatgt gcaacaaaga gcaagtgctt tctgtgtcta 421 gagcgtttca gatcaacacc tttaacctaa aggtgcaacc ttttaatgtg acaaaaggac 481 agtattctac agctcaagac tgcagtgcag atgaagacaa cttccttgtg cccatagcgg 541 tgggagcagc tctgggagga gtacttattc tagtgttgct ggcttatttt attggtctca 601 agcgccatca tactggatat gagcaatttt agtaactgca atctgattga ttatattaca 661 gaatacatac aaaaaa //