LOCUS BG085138 678 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109A09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109A09 5', mRNA sequence. ACCESSION BG085138 VERSION BG085138.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 678) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085138.1. Other_ESTs: H3109A09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3109 row: A column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..678 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109A09-5" /db_xref="taxon:10090" /clone="H3109A09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 162 a 149 c 154 g 213 t ORIGIN 1 attcttttca cctaagataa gcctgccctc ccgttttcta ctcgtcttcc cttcttgtat 61 gtttaagaaa agaatacagc tgataacttg ttcctgggtt gttttatttt attttatctg 121 gcagtgtctt gcaaggtagc ctaggctttt agctcctgcc tctccgtact ccgtgtactg 181 gctagttttt atgtcatttg acacatactt gagtcatcgg gaagaggaaa ctgcatgtaa 241 gaaaatgctc ccactagatt agccggtgag taagcttgcg atgcattttc ttgatgattg 301 atatgtgtgg gagggcccag tccattgtgg gtgtgtgtgg taccaccccc tggacaggtt 361 gtcctgggtg ctataagaaa gctgccaagc aagccatgaa ggaggaacaa gccagtaggc 421 agcctctctc catggcttct gcttcacttc taagatgaaa ttagcccttt cttccccagg 481 ttgcttttgg tcatggcctt tatcaagcta taggaatcct aactaagaca cccagcatgg 541 ctgatgtctt aaccagagga atggactgat ctgagttcat gcagtagcct ggtgattatc 601 ctttttcatt taaggttctc ttacaatctg ggtcctgcat ctttaaaaaa agaaaaccac 661 agaggtgaga tagggcta //