LOCUS BG085082 651 bp mRNA linear EST 12-MAY-2010 DEFINITION H3108D09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3108D09 5', mRNA sequence. ACCESSION BG085082 VERSION BG085082.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 651) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085082.1. Other_ESTs: H3108D09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3108 row: D column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..651 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3108D09-5" /db_xref="taxon:10090" /clone="H3108D09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 186 a 152 c 125 g 188 t ORIGIN 1 ggacaccttt ccatgtttaa gaagtccaag tggaaccatc tgatgcacaa atttgtaatg 61 tgtcatctca agggcctgtc agctgattgg tggaattatc gacacttcca gcatcatgta 121 aaaccaaata tctaccccaa ggatccagac attgatgtgg gcccactctt tctggttgga 181 gatactcagc ctataaagta tggcaagaag aaaataaaat acattgacta tgagaagcag 241 cacctgtact tctacatggt tgcactcccc ttcctcatgc ctgtctactt taatttgcaa 301 tccatgcaag tgatgtacct tcgaaaatac tggatggaca ttgcatgggt cagcagcttt 361 tacattcgtt atttcatcac atttggccct ttctatggaa ttttcggaac agtgttgctc 421 atatatttgg tcaagtttat tgagagcccc tggattgctt acgttaccca gatgagtcac 481 ataccaatga aaatgagcag tgaagagaac cacgactggc tcagcactca ggttgtggcc 541 acctgtaata ttgaacagtc ctttttcaat gactggttca ctggacattt gaacttccaa 601 attgaacacc acctctttcc cacaatgcca cgccataatt accacaaagt g //