LOCUS BG084831 547 bp mRNA linear EST 12-MAY-2010 DEFINITION H3106E07-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3106E07 5', mRNA sequence. ACCESSION BG084831 VERSION BG084831.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 547) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084831.1. Other_ESTs: H3106E07-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3106 row: E column: 07 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..547 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3106E07-5" /db_xref="taxon:10090" /clone="H3106E07" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 128 a 131 c 122 g 166 t ORIGIN 1 acagcttctt ggcacagcac ttctgtggtc tcttcacctg taggcataat actgtagaaa 61 gtgtacagca tcctgactct taagtctgat ttgtgcaaat ttttattgta ctttttaaat 121 agccttctta tgtgcaattc cgagggaaag ccctgttgta aaatatccag tgacagcagc 181 tctccacata gggccttcag acactcatgt ggttagacca tgttgtcacc tataagagca 241 aacgccagcc ctcctctcct ccatagatga ctaaaccgta gttagggcgg agcagagcag 301 agcagccttg tgggaagggt ttccagcatc tgcgcctatc accagcattg acctctggct 361 tttggtttat ttgctagatg tttccccctt ggagttgtgt cggtttcaca ctgtttactg 421 gcccaggtgt cctgtccgtg gccttcgtta cccatagcag accattggct ggaagtcaga 481 ttgatttctt tgaagaaaaa aaagtgaact tgaatcttgt gcgtgacagc tcgttctcag 541 tacattc //