LOCUS BG084384 596 bp mRNA linear EST 12-MAY-2010 DEFINITION H3100C02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3100C02 5', mRNA sequence. ACCESSION BG084384 VERSION BG084384.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 596) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084384.1. Other_ESTs: H3100C02-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3100 row: C column: 02 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..596 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3100C02-5" /db_xref="taxon:10090" /clone="H3100C02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 144 a 122 c 137 g 193 t ORIGIN 1 ggaagacagc aggccttttg actgtgactg cagcgactgt ttttgaatgt cagctgttgt 61 gaatacacgt ctgtggactg acgggtgaga gctgttgtca taaagccagg tgagctcttt 121 cctgcttcag caaacagtgg agcgggctgg aagcagccca tcttgaaccc attcttgctc 181 tgagagatgt ttgatgtagt gccaaacctt aaaatagctc tttattttga tgaataaaat 241 gtaatttatt gagtttcatc tattcttttt cctgaagaaa ctaacttcag gcagtaggtt 301 tttcccagag gagagagatg tccactcatc aacatgagaa cttaaggcct gctcccttga 361 ggatcattct acacggtgct gacgaattca tgtcttgctt tttgtctcta gatggtgact 421 ttcagttctt gggtgtttat gaagtaggga aaatgtttat gtgtttctga aacattcttg 481 aaaccatatt agtgtctgta agaaggcctt cgcttccatt tcgagtttca gaactacagg 541 acaccactgt actggcttcc tcacgaagtc tggtggctgc tattcttttc ccaccc //