LOCUS BG083944 580 bp mRNA linear EST 26-JAN-2001 DEFINITION H3094E05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3094E05 5', mRNA sequence. ACCESSION BG083944 VERSION BG083944.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 580) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3094E05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3094 row: E column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..580 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3094E05-5" /db_xref="taxon:10090" /clone="H3094E05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 156 a 145 c 107 g 172 t ORIGIN 1 gcctggattg tttgggggtt cctatgagac cctacttgat tatatataac ccattcctgg 61 aactggaagc ttcatttggg gatgatagat gtttacctgg agctctgtct cctctgttat 121 ttgccaattt catttagatc accttcatat atgtatatat tttaggaagc ttctactatt 181 ttagttttcc atgtggcccc tcacattgcc cttagtttta gctgtctctt cctgtatttc 241 ctccctcacc acctcccttc cctactcctg gttgatcctc ccattccagt gcccccttgt 301 ctagtaggga ctgaacagag aactcagttg gtaaaatgct ttccatgaaa tcatgaggac 361 ctgagttcaa atcccagaac tcatgtaaat agacccaggc acagtgctac ccacttgtaa 421 tagaagtgct gaatggatac acatggaact ctgcagctca ctggtcagcc agtctagagc 481 taagcaggct ccagctccag gccaatgaga gaccctgtta caaaaacaag caaacaaatg 541 aagcacattc atgtaagtaa aaacacacaa agatcatatt //