LOCUS BG083803 623 bp mRNA linear EST 12-MAY-2010 DEFINITION H3092C08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3092C08 5', mRNA sequence. ACCESSION BG083803 VERSION BG083803.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 623) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083803.1. Other_ESTs: H3092C08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3092 row: C column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..623 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3092C08-5" /db_xref="taxon:10090" /clone="H3092C08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 178 a 115 c 122 g 208 t ORIGIN 1 cctaaatatt tcctctcttt gcatatatga ggattatgaa tttgagttct gcatgtgtat 61 ttatagttct ggttatttaa gctttatttt ttagactctc agcactttaa acccagcagg 121 tttgatttag tgataaaaat ctgtggtttg tcagcttttc aagacataat cctagcttca 181 gccttatctg acaggtagtc agcctagcaa gtctaaggac gaaaaccaga gtgtctcatc 241 ttttcaggca tgacttgcta tttatcttct gaagcataat ttacaattgc tccatcaaaa 301 gtgggtagga ctaaataaga ggtaaagccc ctcttttgcc ttgacacaat acatccattc 361 tgtatgtagt tatcagcaac taggcctaca cggagtacag gcaaatttca aatgggggaa 421 gagcccccta agtgtaggat attggttaat gtaaattttc ctttattcac tgaatatgta 481 aagtatgtaa atttagtcct gctgtcaaaa ggtagctctg tgctattagt ttgtgcagca 541 ggtaagacct gctgcatcct gtactgcact ttcagagagc taatgctaat gacatcttga 601 gcaattgtgt taatgagcca gaa //