LOCUS BG083641 582 bp mRNA linear EST 26-JAN-2001 DEFINITION H3090E02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3090E02 5', mRNA sequence. ACCESSION BG083641 VERSION BG083641.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 582) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3090E02-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3090 row: E column: 02 Seq primer: -21M13 Reverse POLYA=Yes. FEATURES Location/Qualifiers source 1..582 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3090E02-5" /db_xref="taxon:10090" /clone="H3090E02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 138 a 150 c 127 g 167 t ORIGIN 1 tttttttttt tttttttttg gttttttttt cgagacaggg tttctctgta tagacctggc 61 tgtcctggac ctcactttgt agaccaggct ggcctcgaac tcagaaatcc acctgcctct 121 gactcccgag tgctgggatt aaaggcgtgc gccaccacgc ccggcaaaat tgtatcttaa 181 agtacggatt tttattactt tttattgggg tggtagcagg aggggtggga accagacaca 241 tgtgccacag agtataaata gaggtcagag ggcagcctgc aggagctgtt tctctccctc 301 taccatgtgt gtctcaggca ctaaggccat catcaggttg ggagcaggca cctttacccg 361 ctatgccatc tttcaactac cacaaaaaca gtagctcaac aagccgctaa caataagaaa 421 ctgtacttgt catttagcac agaataaaat gggtctttac tcctaactct ataggaaagc 481 ttgttctccc cccaccccct tttattaggg atctcactat ggaggtcagg ctgacctcag 541 atgcatcctc ctcctcctca ctcaagctcc caaatgctgg gg //