LOCUS BG083635 542 bp mRNA linear EST 26-JAN-2001 DEFINITION H3090D06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3090D06 5', mRNA sequence. ACCESSION BG083635 VERSION BG083635.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 542) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3090D06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3090 row: D column: 06 Seq primer: -21M13 Reverse POLYA=Yes. FEATURES Location/Qualifiers source 1..542 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3090D06-5" /db_xref="taxon:10090" /clone="H3090D06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 126 c 145 g 112 t ORIGIN 1 tttttttttt tttttctagc caatcaacag tttatttttc cagttaacac ctacacagat 61 cttactatcc actttacacc ctagcaggga gtctcaactg tggtccagac gagtaggttc 121 tgttcttctc ccctaataca gaagggaagt ccctcgcctc caaaagagaa gagaacatgc 181 catcctcagt gctggcaaag tgctagggga ccctgctgtc ctgcatcatg agtgctgagc 241 tggacaaggg tacagtgtag gttcaaggcg acagtgaccc aagcacagca ctgctggcct 301 gacaccaccc agttccctca gaagagaacc tgccctaaag cttggccagt gcctgtggga 361 aggaggagtt ggcaaagagt gggggtcacg ctgcaaagga caggagacag cagggaaata 421 aagccaacgg gagtgtggga cagtagagaa aattataaag tgcctcaact aaacaaccaa 481 gtgggacacg agggtggagc agcacaggtc cctgaggata ggaagaaaaa gaaaaggtcg 541 ag //