LOCUS BG083355 620 bp mRNA linear EST 26-JAN-2001 DEFINITION H3087D02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3087D02 5', mRNA sequence. ACCESSION BG083355 VERSION BG083355.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 620) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3087D02-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3087 row: D column: 02 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..620 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3087D02-5" /db_xref="taxon:10090" /clone="H3087D02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 125 a 134 c 134 g 227 t ORIGIN 1 cgagccctgg gggtactggt tagttcatat tgttgttcca cctatagggt tgcagaaccc 61 ttcagctcct tgggtgcttt ctctagcttt tccattgggg gccctgtgtt ccatcttata 121 gatgactgtg aacatccact tctgtatttg ccagacactg gcatagcctc ataggagaca 181 gctataacag ggtcccttca gcaaaatctt tccggcattg tgcaataggg tctgggtttg 241 gtggctgatt atgggatgga tccccaggtg gggtagtctc tggatagtct atccttttgt 301 cttagctcca gactttgtct ctgtaactcc tttcatgggt attttgtctc ctattctaag 361 gaggaatgaa gtatccaccc attggtcttc cctcttcttg attttcttgt gttttgcaaa 421 ttgtatcttg ggtgttctat gtttctgggc taatatccac tcatcagtga gtgcatatat 481 aatgacttct tttgcgattg ggttacctca ttcgggatga tatcctccag atacctccat 541 ttgtccaaga atttcataaa tccattgttt ttaattgctg agtagtactc cattgtgtaa 601 atgtaccaca ttttctgtat //