LOCUS BG083343 643 bp mRNA linear EST 12-MAY-2010 DEFINITION H3087C01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3087C01 5', mRNA sequence. ACCESSION BG083343 VERSION BG083343.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 643) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083343.1. Other_ESTs: H3087C01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3087 row: C column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..643 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3087C01-5" /db_xref="taxon:10090" /clone="H3087C01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 151 a 179 c 150 g 163 t ORIGIN 1 ccgactgctg ttcactgtat tgggggaagc attaatttat tccttgtcat tcccagaacg 61 atgtggaaca gggaaaggac atgttggagg tgcaaagtca gcaaccatcg tagcagatct 121 ttctgagaca acaattcaga ccccagatgg agaggagaga ctcgggggag aggcccactc 181 catggtgtgg gacccaagtg gtgaacgtct ggctgtgctc atgaaaggaa acccacaggt 241 tcaggacggg aatcctgtca tcctcctttt tcgaactcga aacagccccg tgtttgaact 301 gcttccctgt ggtattattc agggggaacc aggagcccaa gctcagctca tcactttcca 361 tccttccttc aacaaagggg ccttgcttag tgtgtgctgg tccacaggcc gaatcaccca 421 catacctctg tactttgtca atgctcagtt tccacgcttt agcccagtac ttggtcgagc 481 ccaggagcct ccagctggag ggggaggctc tattcatgaa gtgccactat ttactgagac 541 atcaccaacc tctgctcctt gggaccctct tccaggacaa tcatctgctc aaccccactc 601 ccctcattcc cacttgtaaa taaagttttt cttgtttcca ctc //