LOCUS BG083312 677 bp mRNA linear EST 12-MAY-2010 DEFINITION H3086H04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3086H04 5', mRNA sequence. ACCESSION BG083312 VERSION BG083312.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 677) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083312.1. Other_ESTs: H3086H04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3086 row: H column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..677 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3086H04-5" /db_xref="taxon:10090" /clone="H3086H04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 235 a 122 c 121 g 199 t ORIGIN 1 attaaagttt aaaaagtccc tgactggctt caagagacag tacagtactc ttaaaaagaa 61 atcctattga gatgtaccag tgccagaaac tccactgaac actggacagg cactgcactg 121 tggacttttt aaatgactgg actaggttgt gaccagcaaa acgtcctatt gtcttgctga 181 cgacagatta aattgagatt gtttagaaca accccaaatg ggctggggaa ggtaaaaagt 241 taaataagat aaaagaaaaa cgtcatgcaa attagagcag tcacgttttt gttcctagtt 301 aatgctgtat acatttttaa gtatacctta aaaatgacat tttcctagca aaaaggttcc 361 cattttctca catatgagaa tcgtattctt tgggatcctt gatctctttt ttaaagacaa 421 agctctttca ttttagcaaa atcctatact gaaaaacaac tgaggtgcta aagactatca 481 ccagtcaggt taggaatgtc tgaagaaact aaccttaaaa caagaatgtt tttggtcaaa 541 tttcagacat acataattaa aaaactgact ggccccacca gattaaagat gaagggaggc 601 cctaagaact ctagagagct tatacataca caagtgtctc ttttagatcc tagttttatt 661 aaatattgct tctttgg //