LOCUS BG083229 571 bp mRNA linear EST 12-MAY-2010 DEFINITION H3085H11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3085H11 5', mRNA sequence. ACCESSION BG083229 VERSION BG083229.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 571) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083229.1. Other_ESTs: H3085H11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3085 row: H column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..571 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3085H11-5" /db_xref="taxon:10090" /clone="H3085H11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 161 a 108 c 123 g 179 t ORIGIN 1 gtgagaactt ctatgccaaa aggctcacca aagaccttca ctaaatagtg acctctcctc 61 cttccccatg gcactaagtc ttttcaaagt taatcaatac tctgtgtaaa aactattacc 121 aactctggct acttttaaaa gtaggattct gcataaacgt aataatattc atcctctgac 181 taaatataca aaaatattta aaatataagt attgatattt caggattggc tagcatacca 241 gtgtgtgtgt gtgtgtgtgt gcgcgcgcgc gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt 301 gtgtgtgttt gtttgttttt gagactggga ctcactgcct agttttggct ggtctggaac 361 tcgatatgta gaccaggctg ccttcaaact cagaaagatc taccagcctc tgcttcctga 421 gtgctgggat taaagacatg ggccaacaag cctgtagtca gttatctctt gatgcatatg 481 ccttgatgca taacaaatta ctctgaaata tagtgcttaa gagaacccag cttggaaatg 541 taaatgagct aaatgcctaa taaaaaatgg g //