LOCUS BG083218 685 bp mRNA linear EST 12-MAY-2010 DEFINITION H3085G12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3085G12 5', mRNA sequence. ACCESSION BG083218 VERSION BG083218.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 685) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083218.1. Other_ESTs: H3085G12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3085 row: G column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..685 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3085G12-5" /db_xref="taxon:10090" /clone="H3085G12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 186 a 181 c 137 g 181 t ORIGIN 1 ggcccgggca ttttttcccc cactataata atcctcccag tttttaccca ggaactaggg 61 cgcaggtgga aaagctcaca gttacaagcc ctaactcaga gaagtagctt ttcctttcta 121 ttctcttcta tctctttctt ttgggtactg accaaagacg ggacatgttt tctcaaggtt 181 ttcttgtgaa gcaacccctc acgccgtctc cttcaccata cgacactgct gacctccatg 241 gcagaacatt ctggtctaac tctagagagc catggacatc gttcagcttc ctcctccctc 301 ccacaattct cctccctgaa agatgttcca ttagtttctc tcaaactcta ataaaaatgt 361 ccccaagctc atttagacat tattttattg gtgggtggta gtggcacacg catttaatcc 421 cagtatttgg gaggcagagg caggcgaatt tctgagttca aggccagcct ggtctacaga 481 atgagttcca ggctagccag ggctacatag agaaaccctg tcttgaaaaa aaaaaaaaaa 541 caatcgaaca aaacataaat aagggctggc gagatggctc agcgggtaag agcactgact 601 gctcttccaa aggtcctgag ttcaaatccc agcaaccaca tggtggctcg caaccaccaa 661 taatgagatc tgatgccctc ttttg //