LOCUS BG083200 669 bp mRNA linear EST 12-MAY-2010 DEFINITION H3085F05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3085F05 5', mRNA sequence. ACCESSION BG083200 VERSION BG083200.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 669) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083200.1. Other_ESTs: H3085F05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3085 row: F column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..669 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3085F05-5" /db_xref="taxon:10090" /clone="H3085F05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 192 a 110 c 131 g 236 t ORIGIN 1 cgcttcacat ttcacacgcc tatatttatc tgagtgctgt ctgaaactgt tgtgctagcc 61 acagtagtgc taggagatcc tttgcagact taaatctgtg agtggtgtta agtgcactgt 121 tattgccatg tgagggggca tcaactctga tcccaccacc atgttcagac cgtttttata 181 catttcagtg gccttttttt aaggaaaaaa ctaagcaaaa tgaagtccat aatgaaagtg 241 gcttttattt ggacaaataa cttttatatt ttcatcaaac catgcaaaaa atatatatat 301 attacatctt cctggcacat aactgtcccc ttaaccattg aacagttcag ccattcgaat 361 aaattgtaca tttaaagcgt atagtagctg actgtattat tgagtgtatt gtatactata 421 ttaaatgtga atttgtaccc ttccatttta aaaggtcatt gtgttctact gcctatttta 481 gattacttcg gggatgggaa agggtgtttt ggtaagtaga atttaagtcc tctctcttga 541 ttggttttat gaggatataa ggttatactc ttactaccaa gctcaggatt cttttaaagg 601 tacaaggata ggtgtgagga tttatttttg gttatatttg aactgtatga acggtgggtc 661 tgaaaacag //