LOCUS BG082738 572 bp mRNA linear EST 12-MAY-2010 DEFINITION H3079F09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3079F09 5', mRNA sequence. ACCESSION BG082738 VERSION BG082738.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 572) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG082738.1. Other_ESTs: H3079F09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3079 row: F column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..572 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3079F09-5" /db_xref="taxon:10090" /clone="H3079F09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 138 a 149 c 161 g 124 t ORIGIN 1 gatgagtttg aggatgacaa gatctccctg ccttttgtgg tgactgatct ccgtggccgc 61 aacttacggc ccatgcgaga gcggacagac atgcagggcc agtacctgac agtggagcag 121 cttaccctgg acttcgagta tgtcatcaat gaggtcatcc gccatgatgc cacttggggt 181 caccagttct gctctttcag tgactatgac atagtcatct tggaggtctg cccagaaacc 241 aaccaggtcc tgatcaacat tggcctgctg ctcttggcct ttccagctcc cactgaagag 301 ggccagcttc gacccaagac ctatcacacc agtctcaagg tggcctggac ctcaacacag 361 gcatctttga gacagtcagc gtgggtgatc taactgaggt caaaggacag accagtggca 421 gtgtctggag ctcctaccga aagagctgtg tggacatggt catgaaatgg ctggtgccag 481 agagcagtgg ccgctatgtg aacaggatga caaacgaggc actgcacaaa gggtgctcac 541 tgaaggttct ggcagacagt gagcggtaca ct //