LOCUS BG082728 587 bp mRNA linear EST 12-MAY-2010 DEFINITION H3079E09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3079E09 5', mRNA sequence. ACCESSION BG082728 VERSION BG082728.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 587) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG082728.1. Other_ESTs: H3079E09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3079 row: E column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..587 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3079E09-5" /db_xref="taxon:10090" /clone="H3079E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 173 a 115 c 102 g 197 t ORIGIN 1 gtggaaccca gcgcctctcc agtgttaagc aaggactcta ccactgatcc acaccctaac 61 tcccacctac tccttataaa aataaagtat atgccttcca gaaactagaa cctgagaacc 121 ttgggggccg acatgcagct tacgatgctg ctctttcttc agaaattgtt actaaatctg 181 tggcctattg attcctcaaa gaaattgtat taatttcgat tgaaatttct tagcctcagc 241 actattttaa aatttaatct ggatgatgat aattactcca ttgcttgctt gtattttttt 301 ctgtagtgct ggggattagg tgagggcctt gtgcattcta ggccttgtaa atgttaccta 361 tgccccagca gctcattgct ttcttaagtt taaacctatg ctgtccaatc tggaaccact 421 ggactccggc ttttgagcac ttgaaatatg gctagtttca attgagatat gctttataca 481 ccagaatttg aagttagtat taaaaagaat gtaaaatata taattgataa ctttatattg 541 attacatgtt gaaatactat tttggacata ctgagttaaa taaaata //