LOCUS BG082725 569 bp mRNA linear EST 12-MAY-2010 DEFINITION H3079E05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3079E05 5', mRNA sequence. ACCESSION BG082725 VERSION BG082725.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 569) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG082725.1. Other_ESTs: H3079E05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3079 row: E column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..569 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3079E05-5" /db_xref="taxon:10090" /clone="H3079E05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 166 a 133 c 149 g 121 t ORIGIN 1 gtaaaagagc aagactcccg ggcaagagag gaaactgatg aagaggagga ggacaaggaa 61 aaggacgagg aggaagaggg catgggagag tccgaggttg aggacttact ggagaacaac 121 tggaacattc tacagttctt gccccaggca gcctcttgcc agagctactt cctcatgatt 181 gtttcagcat acatcgtagc tgtgtaccaa agcatgaagg aggagttgag acacagtgcc 241 ccgggcagta cccctgtgaa gaggaagggg gccagccagt tctcccagga gtctgaaggg 301 gcaactggat ctcttcctgg aatgatcact ttctctcagg attatgtggc aaatgagctc 361 actcagagct tcttcaccat tactcagaaa attcagaaga aagtcacagg ttctcggaac 421 accactgagc cctcagagat gttccccgtc ctccctggtt cacacttgct gctcaataat 481 cctgctctgg agttcatcaa atatgtgtgc aaggtactat ctctggatac aaacatcaca 541 aatcaggtga ataagctgaa cagagacct //