LOCUS BG082654 727 bp mRNA linear EST 12-MAY-2010 DEFINITION H3078F12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3078F12 5', mRNA sequence. ACCESSION BG082654 VERSION BG082654.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 727) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG082654.1. Other_ESTs: H3078F12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3078 row: F column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..727 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3078F12-5" /db_xref="taxon:10090" /clone="H3078F12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 199 a 216 c 208 g 104 t ORIGIN 1 cgcctgcaca gttgcagccg ccgcctccca ccagctcgcc caaggaaaag ggaacgcgcg 61 cgaatacggg cgtccccgcc ccagtctttc cccggaacca tgaaccctaa ctgtgcccgg 121 tgcggcaaga tcgtgtaccc cacggagaag gtgaactgtc tggataagta ctggcataaa 181 gcatgctttc actgcgagac ctgcaagatg accctgaaca tgaagaacta caagggttat 241 gagaagaagc cttactgcaa tgcacactat cccaagcagt ccttcaccat ggtggccgac 301 actccggaaa atctccgcct caagcaacag agcgagctgc agagtcaggt gcgctacaag 361 gaggaatttg agaagaataa gggcaaaggt ttcagcgtgg tggcagacac gcctgagctg 421 cagagaatca agaagaccca ggaccagatc agcaatatca aataccatga ggagtttgag 481 aagagccgca tggggcccag tggaggagaa ggggtggaac cagagcgccg agaagcccag 541 gacagcagca gctaccggag gcccacagag cagcagcagc cgcagcctca ccatatcccg 601 accagtgccc ccgtgtacca gcagccccag cagcagcaga tgacctcgtc ctatggtggg 661 tacaaggagc cagcagcccc tgtctccata cagcgcagtg ccccaggtgg cggtgggaaa 721 cggtacc //