LOCUS BG082645 699 bp mRNA linear EST 12-MAY-2010 DEFINITION H3078E12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3078E12 5', mRNA sequence. ACCESSION BG082645 VERSION BG082645.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 699) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG082645.1. Other_ESTs: H3078E12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3078 row: E column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..699 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3078E12-5" /db_xref="taxon:10090" /clone="H3078E12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 208 a 135 c 189 g 167 t ORIGIN 1 ccagtgcggt ggtgcggggt tcatcccaga aagttcaagt cggcagccat gagcttggaa 61 accaagatca aggaattccc caactgagaa ttgtcttact tggaaaaact ggagcaggaa 121 agagttcaac agggaacagt atccttgggg aaaaagtgtt taattctggc atttgtgcaa 181 aatccatcac caaggtctgt gaaaaaaggg tgagcacctg gggtgggaaa gagcttgttg 241 tcgtggatac acctggtatt tttgacactg aggtaccaga tgctgacaca caaagggaga 301 tcactcgcta tgttgccctg acctctccag ggcctcatgc tctgctcctg gtagttccac 361 tggggcgtta tactgtggaa gaacacaagg ctacacagaa aattctggac atgtttggaa 421 aacaggctag aagattcatg attctcttgc tcaccaggaa ggatgactta gaagacactg 481 atatccatga gtacttagag aaggctccta aattctttca agaggtgatg catgagttcc 541 agaatcgcta ctgtttgttc aacaacagag cctcaggcgc tgaaaaggaa gagcagaaga 601 tgcaattgtt gaccttggtc cagagcatgg tgagggaaaa tggtggaaga tgctttacta 661 ataagatgta tgaaagtgcc gagtgtgtga tccagaaag //