LOCUS BG081792 640 bp mRNA linear EST 12-MAY-2010 DEFINITION H3069C01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3069C01 5', mRNA sequence. ACCESSION BG081792 VERSION BG081792.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 640) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG081792.1. Other_ESTs: H3069C01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3069 row: C column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..640 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3069C01-5" /db_xref="taxon:10090" /clone="H3069C01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 200 a 140 c 106 g 194 t ORIGIN 1 gccaagtagc ctcggctggc tggccagtga accccataga tctgcctgtc tcttcttcag 61 cccttgtatt acaaatgggc accactgtgc ctgacttttg tatgtggctt ctggggacca 121 agcacaggtc gtctctactg tcctgggttt ttatatttat gaatctcaac tttgtattaa 181 atttttattt ctactacctc attaactaaa tctgataaca ttttccatat ctctagttgg 241 ttaactcatt ttagaaggaa atatgttaac attagaaaac ttaatatggg aaaagactac 301 aggatgtata tgcaattcat atacatcaaa aagctatcct aaggagctga agagatggct 361 ctgcagttaa gagcactagc tgctttttca gattaccctg gttcaattct cagcatccat 421 atggtagctt acaactgtct ataactccag ttccagggga tccgaagtgc ccttctggcc 481 tccgtgggca catatatgca ggcaaaaaca cccatacaca taacattgaa gaaattaaaa 541 agctatcaga tatttaaaac tacattacta atatcaacta aaaatagcgt atcatcataa 601 aattaaccaa ataatgaaaa gattccactc ccctccttag //