LOCUS BG080838 660 bp mRNA linear EST 12-MAY-2010 DEFINITION H3058A12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3058A12 5', mRNA sequence. ACCESSION BG080838 VERSION BG080838.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 660) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080838.1. Other_ESTs: H3058A12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3058 row: A column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..660 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3058A12-5" /db_xref="taxon:10090" /clone="H3058A12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 177 a 129 c 139 g 215 t ORIGIN 1 tgttaccaca gccctgggaa ccctgcagag gtgaccatgg ctctcctagc agtgaccatg 61 tgcctgcaga gcagcatctg gggaggtgtg gttgcaggtt gtggaacact gctgcaaggg 121 acgtctctct taagtccact agcaaacgag gcagacattt aaggttgatt ctcccgatta 181 ttacatgttt tatttatttt attagacatt tgatattttc tatgaattta aaaatacttc 241 aaagccaatt tcagatgcct tgaccaaatt catgacttgt gtgtgcgtga tttggttaca 301 gacctatttt cataaatgcg gatttataag tttaaaatga tgcatttttc ccacactatg 361 gaatatgtta aaccctcctc tttgatgtta gtggggaagg ctttatgtag tgggtctcac 421 tctagtgtgt aacagagaag ccacgtctgc agacgagctc tgagcagctg ctgtcaggag 481 ttttacaggt gccttctcag agaaaaattg gatttgacca ttttttttcc ctaaaatttt 541 ataattgaat ttctaaaagc ctgcctcatt ttataccatt tctataaaat atgccctgca 601 aagcaaacct gggtacctag cagctgatat tttacaacta acatgggggt atttgagtct //