LOCUS BG080679 604 bp mRNA linear EST 12-MAY-2010 DEFINITION H3057C08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3057C08 5', mRNA sequence. ACCESSION BG080679 VERSION BG080679.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 604) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080679.1. Other_ESTs: H3057C08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3057 row: C column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..604 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3057C08-5" /db_xref="taxon:10090" /clone="H3057C08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 152 a 140 c 142 g 170 t ORIGIN 1 ggcagtggct ttgggcagcg agaaggcact taccacttca gaatgaccat tctccctccg 61 gtggataaac tgaagaccgt gctccacaag gtgaaagact ttcacctgaa gttcctggag 121 cagtactcat gaggacgcct caggcaccgg agccagaccc tcccaagacc acccaggcct 181 tcctcaagga ctctgcctca gacctcagac aggccaccaa cgctgttcat cttcatttcc 241 ccaaggagac ttctttcttt gtgccttgat gtttgagagt tcttcgagca aacagtggtt 301 ttgcaatgtc tcacaggccc tgtttttgtt tttgtttttg ttttgttttg ttttgttcct 361 tttttaaatg caaccaaagt agagtcaacc tgctcggcag atgtacttgg attctctgaa 421 tcgctattct gtttggagag ttcctttggg tcttaagcag ccagagtaca tggaaatgag 481 attatgtcag atctggagaa acaagcaggt gttgggaaat atgtgacttg acatgataag 541 ggctgggaat ccagaaatca atagtgagat ccatgaaatc aaaccctgac cagtgtgaaa 601 atgc //