LOCUS BG080527 627 bp mRNA linear EST 12-MAY-2010 DEFINITION H3054F11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3054F11 5', mRNA sequence. ACCESSION BG080527 VERSION BG080527.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 627) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080527.1. Other_ESTs: H3054F11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3054 row: F column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..627 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3054F11-5" /db_xref="taxon:10090" /clone="H3054F11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 170 a 131 c 169 g 157 t ORIGIN 1 aacatccctc catggcctct gtatcagctc ctgtttgagt tccagtcctg acttcctttg 61 gtgatgaaca acagtgtgga agtgtgtctc taggttgtgt caagacgaca gtgagaacca 121 gcacagacat ccctgactaa ggctggacca acatggcatc tgtgtttcga agtgaggaga 181 tgtgtttatc ccaagtgttt ctccaggtgg aggctgcgta ttgctgtgta gctgagctgg 241 gagagcttgg cttggttcag ttcaaagatc taaatgcaaa tgtgaacagc ttccagagga 301 agtttgtgaa tgaagtccga aggtgtgagt cactggagag aatcctgcgt tttctggaag 361 atgagatgca aaacgagatt ttaatccaag tgcctgagaa ggatgctgag acccctctcc 421 ctcgggaaat gatcaccctg gagacgactc tagagaagtt ggaaggagag ctgcaggaag 481 ccaaccagag ccaccaggct ttgaagaaga gctttctgga actgacagag ctcaaatacc 541 tcctaaagaa aacccaggac ttttttgaga cagaaaccaa cttaggtgaa gatttctttg 601 ttgaagacac ttcgggtctc ttggagc //