LOCUS BG080410 667 bp mRNA linear EST 26-JAN-2001 DEFINITION H3053C11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3053C11 5', mRNA sequence. ACCESSION BG080410 VERSION BG080410.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 667) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3053C11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3053 row: C column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..667 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3053C11-5" /db_xref="taxon:10090" /clone="H3053C11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 234 a 130 c 152 g 150 t ORIGIN 1 atccacccac ttggggcttc tgtccaaggt aaggagcacc tgtgagtcta actgccaggc 61 tctgatgggg gtctcatctc tgtgggacta gaaagtccca acaatctgac caaggtaaca 121 ggaagttaag acaaagacag agaccaaagt cagaatcaga gctgtgctgt gagacaaaaa 181 gataagagaa ataaaatgct ggtcacaaaa gtcaggaaaa ctagaaaact tagatagtac 241 ctggcaacaa acaaaagctt ttggctgaag atcaatgtgt ttaagagata acaaaagggg 301 tgctaataca gaagctgagt ccttaaaaga gtccggtggc ctacctgtta aagcagctaa 361 aaaagagact gtgtttcata ctcctccact gaccagtgca aaacaagcta aaaagttcct 421 gggcactgcg ggcttttgca gattgtggat tccaggtttt gctgagttaa agagataaac 481 agcccttcgt ataaagaaaa aaaaaaagga acaatcttac atggccttag atgctcttga 541 gactgcccta atgttatccc cagctatggg actcctagat gtgactgaga acaaaggtat 601 tgccaaaaga agttcttact cagagattgn gaccctaaaa aagacctgtg gcatacttgt 661 ataaaaa //